GgaINT0141671 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1587523-1587994:-
Coord C1 exon
chr26:1587825-1587994
Coord A exon
chr26:1587680-1587824
Coord C2 exon
chr26:1587523-1587679
Length
145 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACTCTGTGCCCCCAACGCAGGGA
3' ss Score
6.92
Exon sequences
Seq C1 exon
GCTGTGGAGAACTTCATCTACTCCTGCGCTGGCTGCTGCGTGGCCACCTATGTGCTGGGGATCTGCGACCGGCACAACGACAACATCATGCTCAAGACCACTGGCCACATGTTTCACATCGATTTCGGCAGGTTCCTGGGCCACGCTCAGATGTTTGGCAACATCAAGAG
Seq A exon
GTGAGGAATGCCTCTGATTTCGCCCTCCTTCTCACTGCAGTTGTCCGCGTGGGGTTGTGGTTCTTTAACGTCGGGGTTCCTCCTGACTTTATGGGTGAAGTTCCTCTCCTCGTGCCTCTGTGCTCACTCTGTGCCCCCAACGCAG
Seq C2 exon
GGACCGGGCGCCGTTTGTCTTCACCTCAGACATGGCATACGTCATCAATGGGGGGGACAAACCCTCCAGCCGCTTCCACGACTTCGTCGACCTGTGCTGCCAGGCTTACAACCTGATCCGCAAGCACACCCACCTCTTCCTCAACCTGCTGGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTATGTGCTGGGGATCT
R:
GGATCAGGTTGTAAGCCTGGC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]