BtaINT0112019 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44136205-44136844:+
Coord C1 exon
chr4:44136205-44136275
Coord A exon
chr4:44136276-44136749
Coord C2 exon
chr4:44136750-44136844
Length
474 bp
Sequences
Splice sites
5' ss Seq
CTTGTACGC
5' ss Score
1.9
3' ss Seq
CTTTGTTCTTTGACCTGCAGCAA
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTGGATCTCATTTGCCAAATACTGGAAGCCAGTTGGAGGAAACATAATCTTCATCCCTGGGCTCTCCACTT
Seq A exon
GTACGCAAGTATTTCTTGCTCTGTTTTATTCTGGTGTGCAAAATGCTAAACAACTCTGCTGCTAGTATTAGCAAAGCCTTGATTAAACTTAGTAGATGAAAGTAACTTTCACAAGTTCTTACACCATCCGTCCTAGTTCTGAACTCAGCATTTAAAGTTATGCCCCTGCTTCTTCACCCGTCCTCTTTCTTTGGTATATGCTTGGTGAGAAGGGAGGGGCACATAAGCTCAGTACTGCCAAAAAGGGGAATTTGAGTTAACGCAATTTGTCATTTATGTGCCTACTGTCTCGTTAGATTCTAGGCATTACAACGATGGTCATCATCATATCTATGAAGCTTTCCATAGGGTATTGCCTTTCACTGATAGCATGAATTTCATCTGGACGTGGCACTCAGAGCCACTGCTTATGTGCAAATGGGGTTTGGAAATGAGCTGCTTGGCTGAATTGCTGCTTTGTTCTTTGACCTGCAG
Seq C2 exon
CAATAGACAGGCGAGTGCTGCTGAATTTGCGGTCTTTCACATCATGACCAGGATTTTGGAAGCTACTAACACTTTGTTTTTACCCCTGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430:ENSBTAT00000024520:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(20.0=100)
A:
NA
C2:
PF149591=GSAP-16=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]