HsaINT0125323 @ hg38
Intron Retention
Gene
ENSG00000186088 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr7:77320725-77321403:-
Coord C1 exon
chr7:77321333-77321403
Coord A exon
chr7:77320820-77321332
Coord C2 exon
chr7:77320725-77320819
Length
513 bp
Sequences
Splice sites
5' ss Seq
CTTGTACGC
5' ss Score
1.9
3' ss Seq
GCTTTGTTTTTTTTACCCAGCAA
3' ss Score
5.55
Exon sequences
Seq C1 exon
CTGGATCTCATTTGCCACATCGTAGAAACCAATTGGAGGAAACATAATCTTCATTCCTGGGTTCTCCACTT
Seq A exon
GTACGCAAGTATTTCTCACTTTTATCATGGTGTACAAAGAGTGGAAACAACTCTGTTGTAGCAAAACCCTTTTGAAATGCACTAGTTCAAATCAGTTCTCACCAGCTTCAACACCATCTAGCTTAATTCTATACTCAGCATTTAAAGTTATGCCCCCCTGCATATGTACCCTTTAATGTATAATAAAAGCTAAAATTAAAACAAAGTTATGCCCGTTACTTTACCCATCCTCTTTCCCTGGCACATGGTTGGTGACAGGGGAGGGACAAATGAGCCCAGTACTGCCAAGAAGGGGAATTTCACTTAATACAATGTGTAACATATGTTCCTACTCTGATTAAATTCTAGGCATTAGGCCGATGGTCACATTCATATTTATGGGGCTTTCTACAAGGCATAGCATTTCATGATTAGCATGAACCCTTGTGTAGTACTCAAAGCCACTGCTTAGGACAAATGGAGCATCACAGATGAGCTCCTTGGCTGACATGCTGCTTTGTTTTTTTTACCCAG
Seq C2 exon
CAATAGTCGTGGCAGTGCTGCTGAATTTGCAGTTTTTCACATCATGACCAGGATTCTGGAAGCTACAAACAGTTTGTTTTTACCTCTGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088:ENST00000257626:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149591=GSAP-16=FE(20.0=100)
A:
NA
C2:
PF149591=GSAP-16=PU(24.3=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development