BtaINT0112099 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98608859-98609975:-
Coord C1 exon
chr11:98609887-98609975
Coord A exon
chr11:98609063-98609886
Coord C2 exon
chr11:98608859-98609062
Length
824 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TCTGGTGCCTCCCACCACAGATC
3' ss Score
8.67
Exon sequences
Seq C1 exon
TGCGGGGCTACCCGGTAGCCGGGGACGCGGCCGGGGCCCGGGAAGCTGCTGCGGGGGCGATGGCCGCGCCGAGCCCGGGGCCCCGCGAG
Seq A exon
GTAGGTGCAGACCCGAGAGAGGACAGGAAAGGAAAGGGTTGGAGAGCAGGGGCCGGGTCTCCCCGCCCTGTAAGGGGCGGACACATCCCCATCCAAACCCAGAAGGGGTCCTGCACTTGGGCGGGACTGGGACACGCCCCACATGGGGCTGCTGGTCTGAAGTGGGGAGTCCAGCGGGTTTTCCACGAGAACTTGCTTGGTTTCTTCATTGTAAAATGGAGACAATAATAAAAGCGTCTCCTTCATAGGGCGGTTAGGAGGTCAAGCTCTCAGCTAGGGCTGGGCTCGTGGTGGGTGCCTACTGAGGATGGGTCAGAAGCTGTGACCTCAGCTTCGTGGAGACCTGCCGGGCCGGACTGGAGGAATTCGGAGTAGACGAATAGAATAGATGACTTAATCACTGACATCACAGCTCCTACTATAAGGAGATCCTGTGCACGGTGCTCAGACTCACCAGTAACAACAGTTAATACCAGCCCCGAAGGAGGTATTGTATGTAGTTCTCAGTTTACAGACTAGAAAGCGAGGTGCAGAAAGGTTAGGTGATTTACCTGAGGTTACACAGCTAGTGAGAGGCTGCGGAACGAATGCTCCACCCGCTGATAGTAAGAACCATCACTATGAGTGCTGACTGAATGCCAGGCACGGTCCTTTCACAACACGCCGTCGGGTGGGTACCAACCTTTTCTGCATTTTACAACTAAGGGGACTGAGGCAGAGAGATGAGGAGAGAGCTGACAGTGATGTGGGACTCAGACCAGGGTCATTCTCCTGTGGGGTGCTGGCTGCCCCATGCTGACTGCTTCTGGTGCCTCCCACCACAG
Seq C2 exon
ATCCTGGCCCCCTCCCCAGAGGCTGGACGCAGAGCAGCTGCTTCAAGCTCTGGCCACCGTGGCCTCCTCTGGCGTCTGCGGGACAAGCAGTGTCGCCTGGGACTGTTTGAGATCGGCCCGGGGCACGAGCTGCACCAGGTGATGTGCCTGATGCAGGCGGGGCTGTGGGCTGCCACTCAAGTGTCCATGGACCACCCGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387:ENSBTAT00000043239:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.309
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development