HsaINT0125417 @ hg19
Intron Retention
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130691967-130693076:-
Coord C1 exon
chr9:130693002-130693076
Coord A exon
chr9:130692165-130693001
Coord C2 exon
chr9:130691967-130692164
Length
837 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CCTGTGCCTCCTCCCACCAGGTC
3' ss Score
12.65
Exon sequences
Seq C1 exon
GCGGCGGGGAATGCGGCCAAAGCCCGGGAAGCTGCTGCGGGGGCGATGGCTGCGCCGAGCCCGGGGCCCCGCGAG
Seq A exon
GTAGGTGCGGACCCGAGAGAGGACAGGAGAGGGAAGGGTTGGTGGGCAGGGGCCGGGCCTCCCCTCGGCGAGCGGCGCGGACACGCCCCCATCCAAGCCTGGGAGGGGCCCTGCAGCCGGCGAAGACCAGGACACGCCCCACACGGGGCGCCAGGTATCCCGAGGGGCGGCCTGGCGGATATCCCTCAACACTTCCTCAGCTTTCTCATTGGGAAAATGGAGAGGATGCTAAAGCTCCTCCTTCAGGGAGCTGTTAGGAGGTCAAGCTCTCATCCAGTGCGGGGCACGCGGTGGATGCCCACTACTGGTGGGTCAGCGGCTATGAAAAGCATCGTGCTGGCCCCTCCGTGCTGGCCTGGAGGCGCTCAGCATAGGCGAATGGAATAGATGTGACTGAATCACCGGCATCACAGCTCCTACTATCAAGGGCTCCCGTGCAAGGAGCTCAAACTCAAAAGTAACAAGAGTTCATACCTACCACGAAGAAGCTGTTCTAGTTTTCACGTTGCAGATGAAAAAATGAGGCACAGAAAGGTTAGGTGACTTACCTAAGGTCACAAGGTTGGTGAGAGACGGTCCATCTAAGGCCAGGTTTGACTGCAGAGTGCACGCCCTATCTACTGATAATCATAACCATTGCTCTATTCGGGTGCTGACTGCGTGCCAGGCACTGTGTGGCCCCTCTGGGTACCAGCATCATCTCTATTTTACAGCTGAAGAAATTGAGGCAGAGAGAGATGAGGGGAAGTCTCACAAGTAGTGGAAGTGGGACTTGAACCCTGATCTTTTTCCTCTGTGACGCTGCCACAGGCTGTGTCCTGTGCCTCCTCCCACCAG
Seq C2 exon
GTCCTGGCCCCCTCCCCTGAGGCTGGATGCAGAGCAGTCACCTCCAGCCGGCGGGGGCTTCTCTGGCGCCTCCGAGACAAGCAGTCTCGCCTGGGCCTGTTTGAGATCAGCCCGGGGCATGAACTGCATGGGATGACGTGCATGATGCAGGCAGGGCTGTGGGCTGCCACCCAGGTCTCCATGGACCACCCACCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103-PIP5KL1:NM_001135219:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAATGCGGCCAAAG
R:
GGGTGGTCCATGGAGACCTG
Band lengths:
262-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)