HsaEX0047716 @ hg19
Exon Skipping
Gene
ENSG00000167103 | PIP5KL1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:HGNC Symbol;Acc:28711]
Coordinates
chr9:130690712-130693076:-
Coord C1 exon
chr9:130693002-130693076
Coord A exon
chr9:130691967-130692164
Coord C2 exon
chr9:130690712-130690762
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCTGTGCCTCCTCCCACCAGGTC
3' ss Score
12.65
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCGGCGGGGAATGCGGCCAAAGCCCGGGAAGCTGCTGCGGGGGCGATGGCTGCGCCGAGCCCGGGGCCCCGCGAG
Seq A exon
GTCCTGGCCCCCTCCCCTGAGGCTGGATGCAGAGCAGTCACCTCCAGCCGGCGGGGGCTTCTCTGGCGCCTCCGAGACAAGCAGTCTCGCCTGGGCCTGTTTGAGATCAGCCCGGGGCATGAACTGCATGGGATGACGTGCATGATGCAGGCAGGGCTGTGGGCTGCCACCCAGGTCTCCATGGACCACCCACCCACG
Seq C2 exon
GGGCCGCCCTCCCGGGACGATTTCTCGGAGGTCCTAACCCAGGTTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167103_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.288 C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAATGCGGCCAAAG
R:
AGGACCTCCGAGAAATCGTCC
Band lengths:
106-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)