MmuEX0035249 @ mm9
Exon Skipping
Gene
ENSMUSG00000046854 | Pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:MGI Symbol;Acc:MGI:2448520]
Coordinates
chr2:32431238-32433445:+
Coord C1 exon
chr2:32431238-32431414
Coord A exon
chr2:32432171-32432371
Coord C2 exon
chr2:32433392-32433445
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCCTCTTCCCATCAGATC
3' ss Score
9.86
5' ss Seq
ACGGTGAAT
5' ss Score
5.43
Exon sequences
Seq C1 exon
GGCAAAGGCAAGCGCCCCTTTCGAAGATTGGGCACAGTGGTAACAAGAGCGTCGCGATTGGTCGTTCGCCATGCAGAGGCGGGGCCTGATTCCTGCATCTGGGCCTCCGAGACACCGCCAAAGCCAGAGAAGCGGCACCTGGGGGCGATGGCCACACCAAGCCTTAGGTCCCACGAG
Seq A exon
ATCCCGGCCCACTCCCAGGAGGCTGGAAACAAGTCCATTTCCTCAGGGAGCCGCCGCGGCCTTCTTTGGCACCTCCGAGCCAGGCAGTCTAGAGTTGGCCTGTTTGAGGTCGGTCCAGGACATGAGCTGCATAGAATGACACGAATGATGCAGGAAGGGCTGTGGGCTGCCACCCAGGTCTCCAAGAACAACCCACCCACG
Seq C2 exon
GGACCTACTACCCAGAAGGATTACCTGGAAGTCATGACCCAAGTTCACGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046854-'2-4,'2-3,5-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.582 C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCGCCCCTTTCGAAGATT
R:
TTCGTGAACTTGGGTCATGACT
Band lengths:
220-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: