DreEX6011608 @ danRer10
Exon Skipping
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31103439-31112246:-
Coord C1 exon
chr5:31111649-31112246
Coord A exon
chr5:31109632-31109826
Coord C2 exon
chr5:31103439-31103489
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTCTGTGTGTTGTAGATG
3' ss Score
11.03
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTTCTGTTACAGTGTTTACGCAGAGCGTTCACACTGGAAAATACCAAAAAGGATATGTGTAATATATATGTGTGGACACCTTGCACACTTAGTGGAGTGTACACTGTGCAGGGCTAAATGAGCTACAAAAGAACCTTAATATATATATAGTTCATAAACTAGAGAGCAGTGCATAGCGCATTATAACATCGTCGTTTGGGAAACAACTTGAATGTTTGATTAGAGAAAACTATTGCGTCGTCACAATCTACTGAAGTTGTGGTTTAGGCATTTTGCTGTTATCAGTATCTGTGGTCTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTGCGTGTGTGGGACGGGCTGGTGCGGGAGCGCGCACTCTGCTCGAGCACGAGCGTCTTCATCCGCACACCGGCCGTGTCATGTCACGAGAGGAGAGAGAGAATGCGCTGATCCCCCATCCACAAGCCGGACAGAGGACATATGTTCATGAACCACAGCGAG
Seq A exon
ATGGAGATGTCAGGGCCGAGTGTGAACCGCCGCAGTCGCACGGTGAAGAGGCGACGGTGGGGAGGACTGAGGCAGCAATGGAAACTGCTGGGTCTGTTTGAGATCGACCAAGAGCATGAGTTTCACAGTCTCACCTGCATGATGAAGGAAGGGCTGCGTGCTGCTGTGCAGAACACCATTGACAACCCTTTACCT
Seq C2 exon
GATGAGCTGTGTGAGGATGACTACAGTCTTGAGGTTACTCAAATCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.215 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGGTCTGTGTTCTCTCTCT
R:
GACTGTAGTCATCCTCACACAGC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]