BtaEX6046316 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98607648-98609975:-
Coord C1 exon
chr11:98609887-98609975
Coord A exon
chr11:98608859-98609062
Coord C2 exon
chr11:98607648-98607698
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTGGTGCCTCCCACCACAGATC
3' ss Score
8.67
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TGCGGGGCTACCCGGTAGCCGGGGACGCGGCCGGGGCCCGGGAAGCTGCTGCGGGGGCGATGGCCGCGCCGAGCCCGGGGCCCCGCGAG
Seq A exon
ATCCTGGCCCCCTCCCCAGAGGCTGGACGCAGAGCAGCTGCTTCAAGCTCTGGCCACCGTGGCCTCCTCTGGCGTCTGCGGGACAAGCAGTGTCGCCTGGGACTGTTTGAGATCGGCCCGGGGCACGAGCTGCACCAGGTGATGTGCCTGATGCAGGCGGGGCTGTGGGCTGCCACTCAAGTGTCCATGGACCACCCGCCCACG
Seq C2 exon
GGGCTGCCCACGGAGGAGGATTTTTCTGAAGTCCTGACCCAGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387-'1-1,'1-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.309 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]