BtaINT0112101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003387 | PIP5KL1
Description
Bos taurus phosphatidylinositol-4-phosphate 5-kinase-like 1 (PIP5KL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075847]
Coordinates
chr11:98607648-98609062:-
Coord C1 exon
chr11:98608859-98609062
Coord A exon
chr11:98607699-98608858
Coord C2 exon
chr11:98607648-98607698
Length
1160 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CGCTTTGCTCCTTGCTGCAGGGG
3' ss Score
9.34
Exon sequences
Seq C1 exon
ATCCTGGCCCCCTCCCCAGAGGCTGGACGCAGAGCAGCTGCTTCAAGCTCTGGCCACCGTGGCCTCCTCTGGCGTCTGCGGGACAAGCAGTGTCGCCTGGGACTGTTTGAGATCGGCCCGGGGCACGAGCTGCACCAGGTGATGTGCCTGATGCAGGCGGGGCTGTGGGCTGCCACTCAAGTGTCCATGGACCACCCGCCCACG
Seq A exon
GTGAGTGGCCAGTTCTCTGCACCTCCACTAACAGCGAGACCAGGCTGATGCCCCGTCCTGCTAATAAATGCAGGGCTGGGGGTCAGAGCAGGCCAGATAGAAGGGGAGGAAGGCCAGGACTCGGTGCAGGGAAGGAGGGACATTTCTGGGCTGAGGCCAGGAAGCCAGAAAGCCCAAGGTGTGTTGAGGGTATGAGGAAGCCCTTGAACCCATGTGGTGGATGTGTGATCTAGGTGAGTGTCTGCCTCTCTTTAGGCCTCAGTGTCTCCATCTGTATAATGGGTGGGAGGGATTGTACTCCTTGGTCTCTGTTGAGAAGGGACCCCACCCCCACCCTACCAGCTCTGCCCATCCTCCCCAGAGCTCTGGCTAGGGCCAGGCTGGCTCAGCAGAAAGGGTCGCCCACTGCAAGCTCAGCACCCGGATGGCCCCGGGTGAGCATGTGTGTCGTTTGTGTGTGTGCACACATGTGCAGTGTGACCCCATCCTAGTGCAGGGACCTGGAGGTCCAGGGAGATGCAGGAGTCCTCTGAATCTCATCACCTGCTGAAAATCTTGCAGGGTTCCCCAATTCTCAGCATGGTCTCAGCGTCCTGCTGGCTCAAGCTCAAGGGCCATCTGTCCAACCTCATTCTCAGTCTACCCCTCCCTTATTCTCTTCAGTCTCGGCCTCTCCTCTTCCCAGTGGCCATCACTGCTGTTCCCCCTGCTATGAGCACCTTGCTCCCCGTCTTCACTACCCCCACATTTCATCTTAGGGGGCACCTCCTCCAGGAAGATTTCTCTGATCCTGCTCCTCCCAGGCTTAGTCTGGCAGGTCCCTAGACTTCAAGGCCACCCCCTTTTACCGGGAGGGCATCCGGCAACACTTTGGCCAGCGTGTGTCTAGGCACATGTGCCAGACTCTAACTCAGAGACTGGTGTGGGGGACTCAGCAGTGAATAAGACACACCTGGGACCTGCCCCGGCTCACTCTTCCCTCCAGCTCTGGGAGGGCTGGCCGTCTCCCTGCTCAACTCAGGCATACCCGGATTAGTCCCCAGCAGCTGGAGGAACCACAATGGGGGGAAGGGGGTGAGGCCGGGTGCCAGACCCTGGGAGACCCTGGGCTGGCAGTGCCGGCTGAGACTTGCCCTGGGCCGCTTTGCTCCTTGCTGCAG
Seq C2 exon
GGGCTGCCCACGGAGGAGGATTTTTCTGAAGTCCTGACCCAGGTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003387:ENSBTAT00000043239:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=NA C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCTGGACGCAGAG
R:
CTGGGTCAGGACTTCAGAAAA
Band lengths:
230-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development