BtaINT0112592 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021900 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr3:55232193-55232849:-
Coord C1 exon
chr3:55232742-55232849
Coord A exon
chr3:55232274-55232741
Coord C2 exon
chr3:55232193-55232273
Length
468 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CTTCCTTTGTATTGTGTTAGTTA
3' ss Score
6.64
Exon sequences
Seq C1 exon
TCTCCCTTCCCTGGTGATGATGAAGAGGAGGTCTTCGACAGTATTGTAAATGATGAAGTAAGGTATCCAAGGTTCTTATCTACAGAAGCCATTTCAATAATGAGAAGG
Seq A exon
GTAAGAATTTTGTTGTAATATATATATTTTATTTATAAAATAAATACGATACTCAAATACTTTGGCCACCTGATGCAAAGAACTAACTCATTGGAAAAGACCCTAATGATGGGAAAGATTGAAGGCAGGAGGAGAAGGGGACAACAGAGGATAAAAGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTGAGCAAGTTCAGAGAGGTGGTAATAGACAGCGAAGCCTGGTGGTAATGGACAGGGAAGTCACGGGGTTTCAAAGAGTCAGACACGACTGAGCGACTGAACTGACTGATATTAAGAATATGTCCCAGTAGCATTTTAGAAATTGTTTTTCAGTCTTAGATGTTCATGGTTTAGACAAACACATACTAAAAAAAACTCTAAAAGGTTGCAAGTTACGAGAATCCTTCTCAGTGAATCTCTGGTTTTATACTTACTTTCTTCCTTTGTATTGTGTTAG
Seq C2 exon
TTATTAAGAAGAAATCCTGAGCGACGCCTTGGAGCTGGTGAAAAAGATGCAGAGGATGTGAAAAAACACCCATTTTTCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021900:ENSBTAT00000029201:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(9.6=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]