BtaINT0112886 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032515 | PLA2R1
Description
Bos taurus phospholipase A2 receptor 1, 180kDa (PLA2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_175051]
Coordinates
chr2:36470635-36471582:+
Coord C1 exon
chr2:36470635-36470670
Coord A exon
chr2:36470671-36471424
Coord C2 exon
chr2:36471425-36471582
Length
754 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTGCTTATTTCTCTTTCAGATG
3' ss Score
11.59
Exon sequences
Seq C1 exon
ATGTGAGACCCAAGGTTCCACCCTGGTATCAGTATG
Seq A exon
GTAAGAACGATTCCTGAATTTCTAACTTTATGCTACTTTATACCATTAGTCCATAGAAGGCAATTCCATTAGTCTGTTATTACATAGCACCAATGGAGTTACTCTTTTCTTGTGTCTATTGAGAACTAATTTGTTCAAATTAACCATTAATAAATAATCAAACTAGGGACTTCTTTTGTGGTCCAGCGAGTAAGACTCGACACTCCCAATACAAGAGGCCCTGGTTTCATCCCTGGTCAGGGAGCTAGATTCCACATGCTGCAACTAACTAATGATCCCGCATGCCACAACAAAGATGGAAGATCCCACATGCCACAACAAAGATGGAAGATCCCGTGTGCCACAACAAAGATGGAAGATCCCGCATGCCACAACAAAGATGGATGATCCCGCGTGCCACAACTAAGACCCGGTGTGGCCAAATAAATAAATATGTATTTTTTAAAATCAAAATGACATTAAATATTATTAAAGACTAATATCATAGCTTAACTCCATTTTTATGGCACATGATTTTAAAATATGCATCTAGCCCAGACTTTGGAATATACGTGTTTCATATATGAAAAAGACCAGTGAAAATAAGTAAACTGTATACTTACGTATGTGTGGGAGTAGGTGTATTCACACACATTTTCTTAATGTTGAGTGACTAAATTACACATGTGAGGTCAATCATAGCACACCCTATTTAAGATTGCATTACATTGCTCAATAATTGTTGTATCACTTCCATTGCTTATTTCTCTTTCAG
Seq C2 exon
ATGCACCCTGGCTCTTTTATCAGGATGCAGAGTACCTTTTTCATATTTCTGCCTCAGAATGGTCCTCCTTTGAGTTTGTCTGTGGCTGGCTGCGCAGTGATATTCTCACTATTCATTCTGCACACGAACAAGAATTCATCCACAGCAAAATAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032515:ENSBTAT00000046112:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(32.1=67.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGACCCAAGGTTCCACC
R:
CGCTCTTATTTTGCTGTGGATGA
Band lengths:
193-947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]