HsaINT0126449 @ hg38
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:159976068-159976720:-
Coord C1 exon
chr2:159976685-159976720
Coord A exon
chr2:159976226-159976684
Coord C2 exon
chr2:159976068-159976225
Length
459 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTTCACTGTTTCTTTTTCAGATG
3' ss Score
13.57
Exon sequences
Seq C1 exon
ATGTGAAACCCAAGATTCCGTTCTGGTACCAGTACG
Seq A exon
GTAAGAATGACTCTGGCAGCTCTTGAATTTCTAATTATTAATATATACCATATAAGTGCTATTATATACCATTAATGTGTTGTTACATTTCTCAAATCGAGCCTCTCTTTTCTTGTGTCAACCTAGAGCTAATTTGTTCAAATTAATAATTAATAAATGTAGTCATTTAATATGATTAAGGACTAGTATCATCAATCATTTTCATGACATGCGATTTTAGAATATGTACCTATCCCCGACCTTTTAATACTAGTGAAGGTATCTTGTAAGAGATAGACCAAAGAAAAAAAGCAAGTTATATATCTATTTATGTGCATATGTGTCTGTGTGTGTGTGTTCAAATTCCTGTGTGTGTGTATACAATTATTTTTAATGTTGAGTGACCAAATCTCAAATTTGGGGTCAATCCTAGCATACCTATTTATCATTTCAGCATTATTTTCACTGTTTCTTTTTCAG
Seq C2 exon
ATGTACCCTGGCTCTTTTATCAGGATGCAGAATACCTTTTTCATACCTTTGCCTCAGAATGGTTGAACTTTGAGTTTGTCTGTAGCTGGCTGCACAGTGATCTTCTCACAATTCATTCTGCACATGAGCAAGAATTCATCCACAGCAAAATAAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246:ENST00000283243:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(31.8=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACCCAAGATTCCGTTCTGG
R:
CGCTTTTATTTTGCTGTGGATGA
Band lengths:
191-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development