BtaINT0112953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005947 | PLAU
Description
Bos taurus plasminogen activator, urokinase (PLAU), mRNA. [Source:RefSeq mRNA;Acc:NM_174147]
Coordinates
chr28:29964983-29965488:+
Coord C1 exon
chr28:29964983-29965068
Coord A exon
chr28:29965069-29965400
Coord C2 exon
chr28:29965401-29965488
Length
332 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GACTTCTCCTTCCCATGCAGAGC
3' ss Score
9.35
Exon sequences
Seq C1 exon
ATTGGAGCCCTAGACCCCGGCGGAGCATCAGAGTGCCTACAAGTCCCCACAGTCCCGGTCCTGCGCCCCTCTGGCCGTAGCCGCGG
Seq A exon
GTGAGTGTGAGCCTCCCTGAGAGCGCAGAGTGGAGGCGGGGGACCCCGATCCCGCCGGCTTTACTTCCCCTTACAGTCTGCCCCTGCTCGGCTGCGTCTGCGCGCTGAGTCACCGCACCCCGTGCCTATGTATACCCCTACAGCGGCGGGTCCAGGCTGTGCTACGACCCCCTGAACCTCCAGAGAGGGGAGACGGGCCAGACCCGGGGAGCCAGGTCACCGCGGGCTCGTCCCGCAGGGAACCTAGGGGCTCCAGCCCTGAACTGCAGTAATCCACCCCGTCCGCCTTCGCGCTCCTCCGCTTCTTCCCCTGACTTCTCCTTCCCATGCAG
Seq C2 exon
AGCTTCTGTCTAGAGCCCCAGCCTTGCCACCATGAGGGTCCTGCTGGCATGCCTGCTCGTCTGTGCCCTGGTCGTGAGCGACTCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005947:ENSBTAT00000007806:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]