MmuINT0121217 @ mm9
Intron Retention
Gene
ENSMUSG00000021822 | Plau
Description
plasminogen activator, urokinase [Source:MGI Symbol;Acc:MGI:97611]
Coordinates
chr14:21655884-21656357:+
Coord C1 exon
chr14:21655884-21655956
Coord A exon
chr14:21655957-21656270
Coord C2 exon
chr14:21656271-21656357
Length
314 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GACTTCTCCTTCCTTTGCAGAAC
3' ss Score
11.67
Exon sequences
Seq C1 exon
GTAGCCCCAGAGCTCTGTCTGTCATCCATCCAGTCCTTGCGTGTCTGCCAGCGCCCTTCCGCTGCAGTCACCG
Seq A exon
GTGAGTGCTGTTGGTCTGAAGCAAGCCTAGCGGGATGAGGCAGCCAGGGCTCCCGCATGCCTCCCTTCCCACTACCTTGGCTGGCGGAACTGTGGGCAAGGTCACCACTCCAGCCCTTCGCGCCCCTCTACAGAGAGGTTCCATGGTGTTGTGCGGATTCAGAGCCCGCAGAGGGGAGAGACTGCCCGGCTTGGGGAGGTTGGTCACTGATGGCTTGCCCCGCAGGACACCTGGAGTGGCTTCCCTTGGTCTGTAGTAACTCTGCCACCTTCAAGCTGCTCCGCTTCTTGTCCTGACTTCTCCTTCCTTTGCAG
Seq C2 exon
AACTGCTGTCTAGAGCCCAGCGGCACTACCATGAAAGTCTGGCTGGCGAGCCTGTTCCTCTGCGCCTTGGTGGTGAAAAACTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021822-Plau:NM_008873:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF066076=Prokineticin=PU(19.1=94.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: