BtaINT0113833 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45732301-45736970:-
Coord C1 exon
chr19:45736706-45736970
Coord A exon
chr19:45733222-45736705
Coord C2 exon
chr19:45732301-45733221
Length
3484 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
3' ss Seq
GCGCCTCTTTCTGCCTGCAGGGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
AAAAGCAAGAGCTGGATCTCAGAAGATGACTTCTACCGGCCTCCCCGGGAACAGCCCAGACAGAGTCCTTCTGATGCCGCCACAGCTTCTCCCAGAGAGATTCCTGAGTCAAGGCCTGGCCTCCTCGTGCAAGAACCAAGACGAAGCTGCTCCATGGAGGCCTTAGACAAAGCTTGCGCACCTTCCCCAGGAAGCGGGAGAAACACGGCCGCCCTGCCACCGCCGGAACACAGGAACTTCAGGGTGGTGCATCGACGGCAGATGG
Seq A exon
GTAGGCAGCTCTGCGGGCTTCCGGTGCCGCACTGCGCATGAGCAGTGCCTTTCGGAGAGCAGTTCTTTTGCGTTACTGATTGGGTGGTATCTTCTCCCAAGAAAAACCTCATCCCAAAATGTAATAAGGAGCACCCTTGCAGAGTAATTCAGGAAGGCATTTCGGGAAGAGTACTGTATTTTCTCATAAAATCTTTTTTTTAATTTTTATTGGAATATAGTTGATTTACTATGCCGTGTTAGTTTCAGGTGTACCGCAAAGTGAATCAGCCACACAGATACATCCACTCTCAAACTCTTAAGACAGTAATGCTCAAAACTGCCTGCAGAGTACATGAGTACTGTTTCATACACGAGAATGGAAAATAACTTCCCTGAAACTCTCCTGTAAATCTTAATGATTATCCATAGATTATATGTAAGATACATAAAATAATCTTAGGAGTATGACCCCAGAAGGAAAGCCCCGCCCACCTCTTGAAGGCTCAGATGTTCCAGCTGCTCCTCCCTAAGGCCCTTCTCGCAGACGGTTTATTTAGCAGCTCTGGTGGGGTTTTCAGATCTGCCGTTTGTTCAGTGTCCTCTGTGTGCAGTTCACAAGGAGGCCAGCTCGACCTCCACATCCTATGAAATTCCGTAAAGCATTGAACAACCATAACCTAATTTTTCTGTAACCCTCAGAAACAAACAAATGTGCAAGTGTGTGCTAGGGTCAGTCTGTTTGTCGCCTCATTCTCTGTTTGCAGTGACCCAGCAGCAATGGCACCCCACTCCAGTGCTCTTGCCTGGAAAATTCCACGGACAGAGGAGCCTGGTAGGCTGCGGTCCATGGGGTCGCTAGGAGTCAGACACTAAGAGTCGGACTGAGTGACTTCACTTTCACTTTTCACTTTCACGCATTGGAGAAAGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGCGGAGCCTGGTGGTCTGCCATCTTTGGGGTCGCACAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAGCAGAGGATGCTGGCTGGGTTTCTGGGGCCCTGGTTCAGGGAGTCTGGGCACAGCCCTGGTTTCCATGCCACCTCCTCTTAGGTTTTTCTTTCAGCGCATGTGATGGTTACAACCATACCAGAGAAGGTGTGCTTTATGCCTGTATCATCAGGTACCCGGAAGGATAGGAAGACCCTACACAATGATTTGAAATCTCTAAGGCTAGTCCAAGCTGGGAGAGAGAATTGTGTGTCCTTTGGACCCCCTTGTTCAGGAAGATGGCTAGCCCCCAGGGATCAGGGAGCCTTGGGCTGTGTGTGGTACACACACTCCCTACTCAACAGATACTTATTGGGCATCTGCGATGTGCCAGGTGCTATTCTAGGTGCTGGGGACACAACAGGAAACCAGGCCAGGTCCTTATCTTCATGGGAGTTGTATTCTAGTGTGAGAGACAGGAAATAAGCAGATGAACAAGTAAACATATAGTGGGGCGGGTGATCATTCCTGTGGGGAATAGTAAACTGGGAGGTGGGCAGGGTACTGTTTCATAAAGGATGGCCAGGGACTTCCCTCATGGTCCAATGGTTAAGACTCCACACTTTGACTGCTGGGGCCCACGTTCAATCCCTGTTCAGGGAATGAAGATCCTGCAAGCTGCACAGCACGGCCAGAAAGTGAATAAATAAATAAAGGCTGGCCAAGGGAGGCCTCACAAATTAGGTGACATTTGAGGAGACTGGAAAGGTGGGGAGAGAGGCACGAGGCGATCGTTGTATTTCAAGCAGGGAGAACGTGTGCAAAGGCCCTGCGACAGGAACATGCTTGATGTGTCCAGTAAGCAGCAGAGACCAGAGTAGCTGGAACAGAGGAGATGGGAAGGGGGTGGCTAGAGATGAGGTCAGAGTGATGGGGGGCCTCGTGGGCCACAGTAAGGACGTTGGCTTTTGCTCTGAGAGAGACGTGATCTGACTCTGGGGACTCTCCAGGGGAGTCATCCTGGCTTATTTCTTTTTTTTTTTTTTTTTGTGTAATAAAGTTTTATTAAAGTATAAAGGAGATAGAGAAAGCTTCTGACATAGGCCTCAGCAGGGGGCAGAAAGAGTACCCCCTGGCTTATTTCTTGAGGGGCTTCAGGGGGACATAGACCAGTCAGGAGGCCACAGCCATAAGCCCAGCCAGAAATGATGGTGGACCAAGCCCCTGTGAGAGTGGTGGAGGCGGCGAGAAGTGGAGAAAGGCTCTGGGTATACCAAGAGGATTTGCTGATAGATTAGATATGGGGTGTGAAAGGAAAAAAAAAAAATCAAGGATAGCTCCCAAGTTTTTGGCCCAAGCATCTGGGAGGATGAAGTTTGCCATTTTACTAGACGAAGAACATCAGGAGAGAAGCGGGTTTGGAGTGGGAGAATCAGGAACACGTTTTTGGACGTGTCAACTTTGAGAAGCCTATTAGACATACACGGAGCAGATGGAGATTGGAATCTAAAGCTCAAGGGCGAGGTCCAGGCTGGAGATGAAAACTGAGGAGTTGTTGGCATAAAGCCCCAAGACCAGGGAAGACCAGCTTGGAAAAGTGGGTATTAGTAGAGAAGAGAACCAGGGCCAAGCCCAGGGCCTCCATGAAGAGGCCAGTGAGAGGAGGGAGCATCCGGGAGACAGGAGAGGGGGACCAGTGTTGGCAGAGAAGACCCCAGGAAAGGGGGCTCTGCCGTGTGCCACGATGCTGATGGGCCAGGCCAGATGGGGACCAACGACTAGCCTTAGGACGTGGCAACAAGGAGGGCCTGGTAGCCTTGCCAAGGGCAGATTCTGTGGACTCGGGACAGAAGGCTGCTCGGAGGACGTTCAAGAAAGAATAGAAGGAGGGAGTCCCAGAGACATTCCCATGCCTCCTCAGGGGGGTTTCTGTAAAGGGGACAGAGACCCAGGGTGGTAATTAGAGATGTGAGTAGAGTCGAGAGATATTTTTAATGCTGGGAGAAATAACAGCGAGTTTGTGGGCTGATGGGAATGATCCAGGAGAGAGGGAGAAGACAGTGACGCAGGAGGGGCAGAAAAGATTGCTGGAGAGACGTCCTTGTCCTTGAGTAGGCGGGGTGGTGGTGGGGGGACCCCCTGCACAATTGCACAGATGGGAGGGTGGCCTCAGACAGAAGCACAGTCAGTTCATCCCCAGCGACGGGACTCAGAGTGTGGGTGCAGATGCTGGAAGGGGTGTAGTGAAGCACACATGGAGGTGATTGTTGAAGTGCTTTTCTTTTCTCAGTGAAATTCAAGAATGCAGTCATCAGCTGGGGTGAGGGTAGGAGGGAGGCTCTCAAAATACGTTCCCATCCAGCCGGCGGTGGCCTATGTTCTCTGGGTGGTCACAGAGTCCACACCCACGACAGGACTCGGGCCCCGGATATTATCCAGGGTGGCGAAGGGGCAGACCTATCATCTAAAGCGCCTCTTTCTGCCTGCAG
Seq C2 exon
GGCTGTCCAACCCATTCCGGGGGCTCCTGAAGCTGGGCACGGTGGAGCGGCGGGGGGCCATGGGAATCTGGAAGGAATTCTTCTGCGAGCTCTCCCCACTGGAGTTGCGCCTCTTCCTGAGCGGCAAGGAGCGCACCTGCGTGGAGACCTGCTCACTGCTGCGCTGCGAGTCCGTGGGGCCGGCCCACAGCGACGGCCGCTTCGAGCTGCTCTTCTCTGGCAAGAAGCTGACCCTGCGCACCTCGTCCCGGGATGAAGCCGAGGACTGGCTGGACCGGGTGCGCGAGGTGCTGCAGAAGTGCCGGCCCCTACAGGAGGACGACTGGGTGACCATCCAGTACCCAGAGGAGCCCGAGGACCCCCCAGAGGTCCCCCAGGGTGGCCACCCCGCCCCCTCAGACCTGCACATAGAGGCTGAAACCCCCCAGGGCCCGCAGTTCAACTGGTCCTTCTCCCAGGTGCCTGAGCCCGACGCTATCAAAGAGTCCCTTCTCTACCTGTACACGGACCGCACGTGGACGCCCTACATCTTCTCCCTGTCCTTGGAGTCCCTCAAGTGCTTCCGCGTGAGAAACAACGAGAAGATGTTAAGTGACAGCCACGGAGTCGAGACCATCCGCGATATCCTGCCGGACACGAGCCTCGGGGGCCCAGCCTTCTTCAAAATCATTACGGCCAAGGCCATCCTGAAGCTGCAGGCCGGGAATGCCGAGGAGGCTGCCCTGTGGAGGGACATGCTACGCAAGGTCCTGGCGTCCTACCTGGAGACGGCCGAGGAGGCGGTGACCCTCGGTGGCAGTCTGGATGAAAGCTGTCAGGAGGTGCTGAAGTTTGCCACGCGGGAGAACGGCTTCCTGTTGCAGTACCTGGTGGCCATCCCCACAGAGAAAGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359:ENSBTAT00000027135:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]