RnoINT0113452 @ rn6
Intron Retention
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91464795-91468845:-
Coord C1 exon
chr10:91468563-91468845
Coord A exon
chr10:91465716-91468562
Coord C2 exon
chr10:91464795-91465715
Length
2847 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
TGCCTTTTTTCTTCCACTAGGGC
3' ss Score
11.11
Exon sequences
Seq C1 exon
AAAGGCAAGAGCTGGATTTCTGAAGATGACTTCTGCCGACCTCCCAAGGAGCATGCTCTGAAGAACACTTCAGATCTTTGCATATCTCCTCTGCAAGGGACTCCAGAGTTGAGGACTGCTCTCCACGGGCCGTTTTCTCAAGGACCAAGAAAGAGCTGCTCCCTGGGGGCCTTAGACAAAGCGTGTGTGTCCTCGCTGGACTACAGAAATGCCCAGACAGCTCCATCTCCAGCGGTGACACAAGACCATAAAAACTTCTGTGTGGTGCATCGAAGGCAGATGG
Seq A exon
GTAGGTGACGCTATAGAGTCCCATCTCCAGGGACAGTGTCTTTCAAAAGATAGCTCTAGGTCCTCTTTGGCATTGCAAATAGGTGGTGTGTCCTTCCAGAGTAAGTCCTGGCCCAGAGTGTAGAGTTAAGGAACACTGACACTTAGGCATGCAGGACAGCACTTCAGGAAAACTGACTGCTGTGCTTGCTTACGTAGTCTCACTAAAGCAGTGTCAGAGCTGCCTGAAGATACCCCACTCAGCGGGCCATCCAGGTAGCCTGCCTGTGCCTCAGCAAACCTGATTACAGAATATAAGAGTACATTTTTTCTGGTCTTTTGAGGTAGAATAGCCCTGTCTTGCCTAGTCCTTACTATGTAGCTGACATTGGCCTCAAATTCACAGCCATCTTCGTTTGTTCACCTCCAAAGTGCCAGGTTCAGATGTGTGCTACTGCTCCTAGCTTATGTCATTGAAATGGAAGTATTCTCAGTAAAATCATGCTGGGAGACATAGGATGGCAGAGCCCAGCGGGTTCTAAAGCCTTGTGATATCAGCTGCTCAGTAAGGGGAAGCAAATGGGTCTCGAGTTTATAGAACACAAGAGTGAGCTTAAGACCAGCTGGGTTAACTTAGCATAATCTTCAAAAAAATCAAAGGACAGATGGGGATATAGTTCAGTGATCAAACACTGACTGAACGTGTGATGCCCTAAGTTCAGTACCATGAACAAAACTGAACCAAGACATTTGGGACTGCACAACTCATAGGAAGCCTACTCTTGAGTGCCAGCTGTTCTCATGGCTCATGCTAAAAACAAGGCCTTACCTTGGATGATTCAGGAAATAGACCTAACAGGGTTATCAGACCTGCTATCTGTTTCGGCCCTGCTTGTGCTGCTTATGGTGTGGTTTGACTTCCACACCCTGAAAATTCCAGAAAGCATTAAATAACCCTAGCTTAATTGTATTAGCTCAAAATGCGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTTTTTTCAAGACAGGGTCCCACTATGTAGTCCTGGCTGTCCTGGAACTCATAATATAGACCATTTGGCTTCAAACTCAACTGAAATACCTGCCTTTGTTTCCCAGGGGTTGGGATTAAAGGCCTGCAATACCATGCCCAGCTAGTGTTGTGTTTTGTTTTGTTTTTATACAAGGTCTCACACTATAGCATAGGTTGGCCTGAATCTCTACTGTTCAACCTAAATTAGCCTCAAATTTACCACAATCCTCCTGCCTTAGCCTCTTGAGTGCTGGGATTAAATGCACAAGTCACCACACCTACAGATTTCCCTGACATTGGTCTCTGTCTAATCTGATGCTAGGGACTTGGCAGAGAACTGTGCCAAAGCCTATTGGTTTCTCTTGGTTTGTCTCATGACTGGATGATAGTCTCTACCACAGCAAGAGAGCCAGTGCTTCATGCATAGGCTACTAGGCTCTCTGTCACTCTTGTGAAGACTGGAAAAGAGAGAATAGTGTGTCTTTTAGACTCCGGTTGGGGTAGTTCCCGGGAACTAGAGAACAGTGAGCAGTGTGTGGCACATAGGTACTTACTCACCTGCCTGGCCTCCCCCTCACACAGTAGATGTTTCTGTGAATGTGCCAGGTACATCCAAGACGTGCCCAGCACAGTCCCGAGTGCTGAGAACAGTGTCCTACCTTCCTGAGACTCCACTCCTGCTCCTCAGCTGTCACAGCATAGGAAACTTAGCCAGTAGGTGTTTGTAATGAGATGGTGATACTGGGGGATGATCCACAGTGGTCAGGGGAGAGAAGTCATCATAGTGAGAGGAGTCCATCCTCACCCAGGAGGCGACATTCATGGAGGGAAAGCTGGAGAACGAGGTGATCTGCATTCCAAGCAGGGAGAAGAATGTTAACAGGGCTCTTCTGGGAACGTGCTTGACGTGTCCGGGGAACGACAGTGATAACCAGAGTTGAAGGGAGTGGTTAGTGGTAGTATGAAGGGGTGAGGTGTGTGGGGTCGGGCCCATGGGCCACAGGAAGTGCTTGGGTTTTTATTATTGATTTGCATGTAGACACATTCATATAAATCCCTGAAAGCAGGTGAGAATAGCTAGGAGGAGGGTGGCCATAGAGCTGAGGCACAAGTTCTAAGTCTCAGGTGCTCCAGGCTTGAGAGGTCAGGGAGATGACGGCTAGAGATGAGGGCTTTAGGGGGGCCTTTTTGGATTTACCACAAGGTAGGCCTTAGTGGCCCTCAAAGGAGTAGTTTCAATGGCCCAGTGGGACCAGATTCAAGAAGGAACAGGGAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGCTTCGGTCCCCAGCTCCGGGGGAAAAAAAAAAAAAAGAAGGAACAGGGAATCCAAGGCATAGCTGTGGATATTTCATCCACGTACAGTAGCAGTAAGTGATGGGAATTAAGAGGAAAGGTTTGTGAGCATGGGAGGAATGACAGCAGCCAATAGGAATGGCCCAGTAGAGAACGGAGGAAGGGGCAGCGGGAGAGGAGAGTTGGGCACACATTGGCAGGGTGGGGGGCTGTGCATCAAGGAGGCCTGTGAAGGAGTCTGAGCCTTCCATCTTTTCAGTGAAATGTTGGAGGTGAGGTCACCCGCTGAAGGGAGGACAGGTGATGATGTACAGAAACCTACTTGTAGATGCAGGGTCCCATTTGAAAGCACGTGGGGACAGCACGTGGGGATGGCAGGCAGTCTCCCACAGAACACCGGGCACCAGTTGTGGCTTTGAACTAAAAAGGGACAGGCCCAGTCTAAAGTGCCTTTTTTCTTCCACTAG
Seq C2 exon
GGCTCTCTAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTAGCCCGGCGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCACTGGAGCTCCGCCTCTACCTGAGTGACGAGGAGCGCACCTGTGTGGAGAGCTGCTCCCTGCTACGGTGTGAGGCCGTGGGACCAGCACACAGCGATGGACGTTTTGAGTTGGTCTTCTCCGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAGGACGAGGCTGAGGACTGGCTTGACCGTGTGCGGGAGGCTCTGCAGAAGGTGCGCCCTCAGCAGGAGGAGGAGTGGGTGAATATCCAGTACCCAGACCAGGCTGAGGATTCCCCAGAGGCGCCACCAGACAACCTTCCCCCCTATTCAGCCCTGCTCCCAGAACATGCAGGTGCACAGGGAATACAGCCAAACTGGACATCTGCCCAGGTTCCAGAGCCAGATGCTATCAAAGAGTCTCTTTTGTACCTGTATGCAGACCGGACCTGGATTCCCTATATCTTTTCCCTGTCCTTGGAGTCTCTGAAATGTTTCCGTGTGAGAAACAATGAGAAGATGCTAAGTGATAGCCATGGAGTGGAGACCATCCGGGACATCCTGCCAGACACCAGCCTTGGGGGCCCAGCCTTCTTCAAAATCATCACGGCCAAGGCTGTCCTCAAACTGCAGGCCAAGAACACTGAGGAGGCCGCCCACTGGAGAGACCTAGTCAGGAAAGTGCTGGCGTCTTACTTAGAGTCAGTTCAGGAGGCTGTGACACTTGCTGGGAGTCTGGATGAAAACTGTCAGGAGGTCCTGAAGTTTGCCACCAGGGAGAATGGCTTCCTGCTACAGTACCTTGTGGCCATCCCGACCGAGAAGGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521:ENSRNOT00000037147:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]