BtaINT0113834 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020359 | PLEKHM1
Description
pleckstrin homology domain containing, family M (with RUN domain) member 1 [Source:HGNC Symbol;Acc:HGNC:29017]
Coordinates
chr19:45729719-45733221:-
Coord C1 exon
chr19:45732301-45733221
Coord A exon
chr19:45729865-45732300
Coord C2 exon
chr19:45729719-45729864
Length
2436 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
CCCCCTGTTCCTCTCCGCAGGCT
3' ss Score
13.61
Exon sequences
Seq C1 exon
GGCTGTCCAACCCATTCCGGGGGCTCCTGAAGCTGGGCACGGTGGAGCGGCGGGGGGCCATGGGAATCTGGAAGGAATTCTTCTGCGAGCTCTCCCCACTGGAGTTGCGCCTCTTCCTGAGCGGCAAGGAGCGCACCTGCGTGGAGACCTGCTCACTGCTGCGCTGCGAGTCCGTGGGGCCGGCCCACAGCGACGGCCGCTTCGAGCTGCTCTTCTCTGGCAAGAAGCTGACCCTGCGCACCTCGTCCCGGGATGAAGCCGAGGACTGGCTGGACCGGGTGCGCGAGGTGCTGCAGAAGTGCCGGCCCCTACAGGAGGACGACTGGGTGACCATCCAGTACCCAGAGGAGCCCGAGGACCCCCCAGAGGTCCCCCAGGGTGGCCACCCCGCCCCCTCAGACCTGCACATAGAGGCTGAAACCCCCCAGGGCCCGCAGTTCAACTGGTCCTTCTCCCAGGTGCCTGAGCCCGACGCTATCAAAGAGTCCCTTCTCTACCTGTACACGGACCGCACGTGGACGCCCTACATCTTCTCCCTGTCCTTGGAGTCCCTCAAGTGCTTCCGCGTGAGAAACAACGAGAAGATGTTAAGTGACAGCCACGGAGTCGAGACCATCCGCGATATCCTGCCGGACACGAGCCTCGGGGGCCCAGCCTTCTTCAAAATCATTACGGCCAAGGCCATCCTGAAGCTGCAGGCCGGGAATGCCGAGGAGGCTGCCCTGTGGAGGGACATGCTACGCAAGGTCCTGGCGTCCTACCTGGAGACGGCCGAGGAGGCGGTGACCCTCGGTGGCAGTCTGGATGAAAGCTGTCAGGAGGTGCTGAAGTTTGCCACGCGGGAGAACGGCTTCCTGTTGCAGTACCTGGTGGCCATCCCCACAGAGAAAGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
Seq A exon
GTGCTGACTCCCTGTCCCCCACCTCCAGCCTGCCCGCACTGGGGTTCCTGCTCTAGGCTCTGCACTCCTTCCTGCTCCCCACAGGCGCCCCCATACTGCCTCGGGGATGTTGCAGCAAATTAGGCTGTTCCATGATCATATTATATTCTTCTGGAGCCAGGGCTTCAAATATTTTTGCAAGCTTTTACAAGTGTGCACAGGTATTTAATTACAAAAATAGGCTCCTACTACTTACTGGCCAACAGAACTTTCTGTGACGATGACAATGTTCTGGAATCTGTGCCATCCAGTAGCGTAGCTACAAGCCACGTGTGGCTACTGCATATTTCGTGTGGCTTCCTGGTGTGGAAGGAAGTGAATTTTCATTTGGCTTTAATAATGTGTGTGTGTGCATGCTCAGTCGTTTCTGACTCTTTGCAGTCCCGTGGACTGCAACCCGCCAGGCTCCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGGAGTAGGGTGCCATTTCCTCCTCCAGGGGATCTTCTCAACCCAGGGGCTTCTTCGACCCCATGGCTCCTGGGTCTCCCGCACTGGCAGGAGGATTTTTTTACCACTGAGCCACCTGGGAAATCCTTTTTAATAATATATTTAAATGGGCACCTGTGGCTTGTGGCCACGATTTTAGACAGCTCAGCTATATCTATTGTTCTGCAGCTTGGCTTTAATCCAGTTAGGAATATGTTAGCACATTCTTCTGCGTCAGTACATCTGCTGTGTCATTAGCATCATCAGATCCAGTCCTCCCATGCCAGGCACTGGGCCAGATGCTTTCTTTGGATTGTCTCATTTAATCCTGACAACAACCCCGTTGGGATTTGTCTCTATTTATAGCTGAGGAAACTGAGTCACAGGACTGGTGAGTCCTGTCCCAGGTTCACACAGCGAGCAATGGTGGAGCCGGAAGAGGACTTAGTGGCCCCAGAACCTGTGCTGTTAGCCAGGCACCCACAGGGCCTCTCCACCCCCGTGCTTTCAAGGCTGCATGATACTCCCTTGCTCACATCCCATTTCTAGGTCTTCTCCTCAGTGCAGACACCCATTTCCTTCAGCCTGGGCCTTTCAGCTGAACTGTGAGGAGGTGGCCCTGCTGCACGGGGAGACGCAGCTGTGCGCCGTCTAGGAGCCGTCCCGTCAGGGTGGAGCATGTGGGACTGGAGGGGAAAGCCTGCTTCAAGCATCTGAAGGAAGTGGTCTGTGGTTGGTCCCCCTCCTCCTTCCACCCCCGGAGGATGGAGAAGCTATGCAGAGCAGAGCTTCTTGCAGAAAAAAGTCTTCAAGCCCCTGTTCACCCCTTGCCCTCCTCCCCCACCTGCCAGCCCTAACACTCACACTTTGCCCTTTAACCCACGGGCTCCAGGTTCAGAGAGGAGGCCAGGCCCCCAGGGCTAGGAGGAGGGCTTCCCCACTGGGGATGTGGATGCTAGCAGGCAGCTTTCCCCACACCTGCCACCATTATCCCTCCCACCCCCACCAGCCCCAAGCCAGCCAGACTGAAACTGGGGAGCTTGGGCCTTCTTTCTGCCCACAGAGCTCTGTGGCCAGGCCACCAGCCTCTGACATCTGGCTTATATCTCATAGTTTACTTTCAAAACCTCATTTAAACTTTGTAATAACCCCACAAAGTAGCAAATAGTAGCTGAATTGGAACCTTGCAAAAATTCAGTGAGGGTCAGAATGAGACAGCGCATACACCAAAGAACCAGCCCTTCTAGTCTCCAGGAGGCTGAAGGGACACCCCCTGGCCCTGTAGGAGGCAGGGCCTGTGCTCAGGGTTTGAGCCCTGCCTCTGGTGCCGTGGGCACACCCTACTTTGATCCCTCTGTCCCCTGCTTTGGGGGACTCCAGCAGAGGGACTGAAGCTGGGCCCTGTGCCCCATCCCGAGGTAACAGGCCTGGCTTCAGGCCATGTCCACCACCTCTATGTCCAGCCCCATGTCCCCAGCTCCCTGCCGAGACTTTGACTCCCTGCTTCCATTTCTGGGCCCCAGTGGAGGGGTGAGCTTAGCGGAGGCTGGGATTGGTGGACAAGCCATGGAAACATTGAACAGAGGCAGTTAGGAATAAGAGAATGCGGGCTCTGCTCCAACCTGACCCAAACTTGACTCCAGCTGTGCACCCATTCGTGGTGTGAGTGAGCAGGTTTCCTAACCTCTCTGTGCATCAGTTTCTTCAGCTGGGAAACAGTGACAATAATTCTTACAGTGTTTTGTCATAAAGGTTAATTACCTAGAGTGGATTCTGATTGGTGGGAATATGAATGGCGGTTGTTTTTATCTTCATGCTCTCCTTTCTAATCGGGCCGCGTTCCCTAGCTAGCAGGCCCTTTGCCTCGGCAGCTCCTGTGTTGCTCAGGAGCTGACTCTGGCCCCACTGCTGCTCACCCTCCCCCTGTTCCTCTCCGCAG
Seq C2 exon
GCTGCTCCCGGCAGATCGGCTTCTCATTTGTGCGACCCAAGCTCTGTGCCTTCTCTGGCCTCTATTACTGTGACATCTGCCATCAAGACGATGTCTCAGTGATCCCGGCCAGGATCATCCACAACTGGGACCTCACCAAGCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020359:ENSBTAT00000027135:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139011=DUF4206=PU(16.7=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]