RnoINT0113453 @ rn6
Intron Retention
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91462143-91465715:-
Coord C1 exon
chr10:91464795-91465715
Coord A exon
chr10:91462289-91464794
Coord C2 exon
chr10:91462143-91462288
Length
2506 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
ACCCCGGTCCATTTCCCTAGGTT
3' ss Score
10.44
Exon sequences
Seq C1 exon
GGCTCTCTAACCCATTCCGGGGCCTCATGAAGCTGGGCACAGTAGCCCGGCGAGGAGCCATGGGCATCTGGAAGGAATTCTTTTGTGAGCTGTCCCCACTGGAGCTCCGCCTCTACCTGAGTGACGAGGAGCGCACCTGTGTGGAGAGCTGCTCCCTGCTACGGTGTGAGGCCGTGGGACCAGCACACAGCGATGGACGTTTTGAGTTGGTCTTCTCCGGCAAGAAGCTGGCTCTCCGTGCCTCCTCCCAGGACGAGGCTGAGGACTGGCTTGACCGTGTGCGGGAGGCTCTGCAGAAGGTGCGCCCTCAGCAGGAGGAGGAGTGGGTGAATATCCAGTACCCAGACCAGGCTGAGGATTCCCCAGAGGCGCCACCAGACAACCTTCCCCCCTATTCAGCCCTGCTCCCAGAACATGCAGGTGCACAGGGAATACAGCCAAACTGGACATCTGCCCAGGTTCCAGAGCCAGATGCTATCAAAGAGTCTCTTTTGTACCTGTATGCAGACCGGACCTGGATTCCCTATATCTTTTCCCTGTCCTTGGAGTCTCTGAAATGTTTCCGTGTGAGAAACAATGAGAAGATGCTAAGTGATAGCCATGGAGTGGAGACCATCCGGGACATCCTGCCAGACACCAGCCTTGGGGGCCCAGCCTTCTTCAAAATCATCACGGCCAAGGCTGTCCTCAAACTGCAGGCCAAGAACACTGAGGAGGCCGCCCACTGGAGAGACCTAGTCAGGAAAGTGCTGGCGTCTTACTTAGAGTCAGTTCAGGAGGCTGTGACACTTGCTGGGAGTCTGGATGAAAACTGTCAGGAGGTCCTGAAGTTTGCCACCAGGGAGAATGGCTTCCTGCTACAGTACCTTGTGGCCATCCCGACCGAGAAGGGCCTCGACTCCCAGGGCTGCTTCTGTGCAG
Seq A exon
GTGCTGACTGACTTGCCACCGACCCCAGCTGCCTGTGTTCGTCCTGTGGAGTACAGCACATTGGCACCTACACTGCAGCTCTGTCCTCCACAGTGCTATCTGCACAGCCCCTGCCTGCCTTTCTTGACACCTCCTAATGCTGGGTGGGACCTGTGGGCGCAGTCCTGCTTCCTGGCCTTCCTGCTTTAGTGCTACACTGCATACACTTTTGTTGCAAGGGCGTAGGATCTTTCCAAAGCATGTGTGCTTGCATGCTTTTGTAAGATACGCTGTTCAGTGCTGTCCAGTAGGGCTTCTGTAATAGTGAAAGAGCTTGGGTCTGTGCTTTCCAGCTGGAGTTACAGGTTACATGTGGCCACTGTGTGCTTAAAGGGTGGCTGTAGAACTAAGATGAAATCTCATTTACTTAAGTATAACGGCTACATCTCACTTTGAGCCACTGTATTGGACAACATATTGCCCCACAGTTTAAGGGACATCGACCCACATGTCTCATGTAGCCTAGGCTGGCTTCGAACTCTTTGTCCTCCTGCCTTCGCCTTCTAGGTACTGGGATTATAGTATCCACCAACACTTTTTTTTTTTTTTTTTTTTTTTAAGATAGTGTCACTGTTAGTCAAAGCTGGTGTTGAATTCTTGCTGCCTCAGCCCCCTAAGTATTGGGTTTACAGGCGTCTGTCACCACACCTGGTTGGCTTTCCTGTGCCTTCCTCTATGCATTCTGTGGGAAGGATTCGGCTGTGCCGGTATCATCGGGATCTGATCCTGTGCAGGCACAAAGCCAGATGCTTTGTTTGGATGATCTCATTTTTCTGCTCAATACATCCTTGTAGAGTTAGGGGCCATTATTTCCTCATTTTATATTAGAGGTGAGGAAAGCAGAGCCCAAAGCTAGTGTCTCGTCTCAAGCTGTTAGTATGTTCAAGAGTCAGAGCTGATGATTGTGTCCTAGAACCTATGTATTGGCACACCAGAGGGCCTCCCAGTCCCGTGCTGTTCCACCGTCCGCCTTCCTTTGGTGCTCTTCCCATCTGTGCTGGGACCTGCCGTCTGAGAGAGATGGCGGCTGCCATGCTGCAAAGGAATGGAGCTGAAAGCTGAGCTTCCTCATGGGGTGGGGTCCATAAGACAGAGAGGAAAACCTGCTTCAAGTGACTGCAAGGAAGTGGCCTGTGGCAAGCCCTGGAGGGTTTGCTGAGCAGAGCTTCCTGCAGAAAACCCCTGCAGACCTCTGCCTGCACTCACACTCCAGACTCTGCCTGCGGGTGTGAGTACTGTAAGGAGAGCTCGTCCCTGTGACTGTCACCTGCCAGCCTGCTGTTGGACACGAGCATACCCAAGGAGTTCAGGCTTTCTACACTGCTGCACTGTCCAGTGGGCAGGAGGATGCCAACCAGTAATACTTGTGTTGGAACTCACAGTTTAAAGAGCACTTGCATTATTTATGCTTTGTAATGACCTCACCAAATAGCTGGCAGTAGCTAAGTTATACAGTGAGACAGTCTTAGGAGAGTTGGGTGAAGTTGACCTGGGTAGGCAGCTCAGCAGCAAGAAAGCCAACTCTTTGGCCTGAGACCAAAGGGACCCTTTACCACCACACTAACTTTTTGCCCTGGGTACTCCTGATCCTTGCCTCTGTGCTCTCTGGTGTGCTTACTGACCACGTGGCTAACCCTGTCACTGCCTACTGCCCACTGCCCACTGCCCTGAGATTTGCTGCCGTAGACTCAAATGGAGACCATGTTATATCCAGGTCATGCTGTCCTGCTGGCTTGCTTCCTCTCCACAGCTGCCTCACTGCTAGTCAAGGTCCTAGCTTTGTGGCATTTGTTTCTGAGCCCCACTGGAGAAATAGGGATACAGGTTGGCAGTGAGGAGCAGGCAGGGGAACTTGTGAACAGATGGCAGTGGAGGAGAATGATGACTTTGTGACCAAACCCAACTTTGAGTGCCACCTGTCACTTAGTCTTGCTGTGTGACCTGGCAAATGTCTTCCTCTGATCTGAGTGTGCTTTGAGACAGGCTCTTACTGTGTAACCCTAAGCTGACTCCAGACTCAGGCTCCTCCTACCTTAGCTTCCAAGGGCTCCTAGAACCAGCAATAATCACTTAACAGTGTACTGTCATAATTAACCATTTTTCCAGGTGTGATGGTGCACAAAGTGCAATCCTTTAATCCCAGCACTTGAGAGGCAGAAAATTGGCAGGTATCTCTGAGTTCAAGACCAGCCTCTGACACATAGTAAGACCCTGTCTCAAAAAACAAACAAACAAACAAACAAAAAAAAAAAAACCCCACAAGTTTTTATTGTAAGTGGTGAGTTTATGAGTGGTTAAAAAGGTTGTATATTTATTTATCAAGAGAGGGGGTTGGTCAGAGGAATAGGTTCTCTCCTTTTATCTTTGTATTAGCAGTCCTTTCCCACTACAGCAGACTCTTGTGTTTTTCATAAAGCTGACTCTGGCCCTCACTACTTAACTTATCTACCCCGGTCCATTTCCCTAG
Seq C2 exon
GTTGCTCCCGGCAGATCGGCTTCTCCTTTGTACGACCTAAGCTCTGTGCCTTCTCTGGCCTATATTACTGTGACTTCTGCCACCAAGACGATGCCTCGGTGATTCCAGCCAGAATCATTCATAACTGGGACCTCACAAAGCGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521:ENSRNOT00000037147:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139011=DUF4206=PU(17.1=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]