BtaINT0113930 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001271 | PLG
Description
Bos taurus plasminogen (PLG), mRNA. [Source:RefSeq mRNA;Acc:NM_173951]
Coordinates
chr9:98031497-98033904:-
Coord C1 exon
chr9:98033732-98033904
Coord A exon
chr9:98031646-98033731
Coord C2 exon
chr9:98031497-98031645
Length
2086 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCGTTCCCTCTTCCCTCCAGACT
3' ss Score
9.98
Exon sequences
Seq C1 exon
TGGCTTGACAATGAACTACTGCAGAAATCCAGATGCCGATAAGAGCCCCTGGTGTTATACCACCGATCCGAGAGTCAGATGGGAGTTCTGCAACCTGAAGAAATGTTCAGAAACTCCAGAGCAGGTGCCTGCGGCTCCCCAAGCCCCAGGCGTAGAGAATCCTCCTGAAGCAG
Seq A exon
GTAAGAAGTCTGTGGCCAGACATCTGTGTACTCGGGTAGAGAGATGATAAGAGGTGGAGAGTCTTCCCGAGGCAGAGGCTTCATTGCTGCGGGGGGACTGGAGTGCTGGCTGAGTTTGTGATGGGGAAGGCTGCTTCAGGGTATCGTTTGGGGAAGCCAGAGCTGCTCTTGCTGGCCTGATGGGGGTGGGTGTGTCTTTAGGAGTTGAAAACTAATGGAATGAACTTGTGGACCCAGCGGGGGAAGGAGAGGGTAGGACGAATTGAGCAAGTAGCATTGACATATATACACTATTATGTGTGAAATAGATAACTAGTGGGAAGATGCTTACAATATAATATATGCATATAACACAGGGAGCCCACCCTGGTGTTCTGTGATGACCTCGAGAGATGGGACGGGAGGGGGGTTGTTGTTTGTTCTTTCAGTTGCTCAGTCATGTCCAACTCTTCATGACCCCATGGACTGTAGCAGCCCAGGCTCCTATGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAAGGGAGGGGGGAGGAAGGCTTAAAAGGGAGGAGATATATATATATATAAAATCATGATTGATTCACATTGTTACATGGCAGAAATCAACACAACATTGAAAAGTAATTATCCTTCAATTAAAAAAAAAAAAAAGAAAAGTAATTGGCTGTGAGGGATGGATACAGTTTTGAGCCTGGATGGATTGAGAGGTTGATGATAGTGGCCGAGGTGGGACATTCTAGAAAAGCGAATCTCTGCCTTTTGCATGGAGGGGTAGAAAGGACTGATTTGGTTTTGGATGTACAGAGTTAGGAGGGCTAGGAAGACTGTCAATGATCATCTCCAACAAAGGCTTGGAGAGAAGTGGACATGCAGCTCCAAGCGTCTGCAGCCCTGAGGATAAACATGTCATCCAAGGTGGGAGGCAAAGGATAACCAGGCTCTTCTCCACCTCCCCGGCCCTTTGCCCACGTGTCACCCCGTGTGCTGAGCCTCTGGTCCTGTGGCTGTCAGGTGGCAGGAGTGCTCGGTCCTCCGACAGGGTAAGGTCACAGAGGGGACCGACTCTTCCCTTGCCCTGGCATGAAAGCTCAGTGGTCTCTGGCTTGTCTGACCACTTTTGGGTAATCCAAGATCAGACAGAAACAATTAAAGTGAGGACTTGGTTTCAAGTTGAGACCCCCTCTCCTTCCGGAGGGGGACTTGGCTCCTCTGAGATGCTGGAGAACCTTACTAGCTGCTCCCTACTGTCCCCCTGTACACCTGCTGTACATATAGGACCAGCTCATCTCTGCCCCACTTTCCTGGTGAGACTTTGGGTGCCATGGCCCAGCTGGGGATCCCTCCTGATGAGACTCAGGTGGGATGGACCTGAGTCATCCCACATCACATGGACTCAGGTGGCCCTCCCACGTGATACCCCACATGTGGTTGTGGGTAACTCACACAGTCTGTTCCTGGCACACACTGGAGGTGGCCAAGCACTGCCCTGCTCCTTGGGCATGGGGCTAGCTGGCCCAGCTTTTGCTGTCTGGATTTTCCAAGTGCTCATCAGAGCACTGTGTGCTGGGACCCCATATGTAACACTTAACAAGGGCTCAAGCCTCATCCCCAAGGCACGAGGTGAGGGAGGAATTTGGGGAAGGGACCTCTAGCCACCTCTTTCTTACCTCTTTCATCCCAGAAGGTGGCAGAGCTCTGGCCAAAATAATATACTTTTATGAAATCCTTTTCCATCTGCTCTCTTCATTGAGAGTGAGTTATTCAAGGATCATCTCACATTTCGTAGAGGCATCTGTTACCTCTCAGTTTGTTATAAAACTGAGTATCTAAGTGTCCCGGCCAAAGTTCCCGTTCCAACACCCGGACTTGTGAGTCCTTCTGAGACAAGAGCATCTCTGGCGACTTGTTAAAAAAGTCGTCAGGGCGCACTGAAACCTCCAGGGCTCCTGTGTTCCAAAGGACGTGACTACAGCCTGTCCTGAGAGACGCCGAGCGCTGCCACATTTGATCCTTGTCGCCGGGTCAGTGTGGGACAGGTGACACCGTTCCCTCTTCCCTCCAG
Seq C2 exon
ACTGCATGATCGGGATGGGCAAAAGCTACCGCGGCAAGAAGGCCACCACGGTGGCCGGTGTCCCCTGCCAGGAGTGGGCGGCCCAGGAGCCCCACCACCACAGCATCTTCACTCCAGAGACAAACCCACAGTCAGGGCTGGAGAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001271:ENSBTAT00000053284:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.322 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(44.9=59.3)
A:
NA
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]