GgaINT0078390 @ galGal3
Intron Retention
Gene
ENSGALG00000004293 | F1NWX6_CHICK
Description
NA
Coordinates
chr3:47277243-47277467:+
Coord C1 exon
chr3:47277243-47277257
Coord A exon
chr3:47277258-47277318
Coord C2 exon
chr3:47277319-47277467
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGG
5' ss Score
4.99
3' ss Seq
CTTTTCCTCTTTCTTCACAGATT
3' ss Score
12.58
Exon sequences
Seq C1 exon
CTTCACCACCATCAA
Seq A exon
GTATGGGTGTGACCCAATTGCTGACTGCTAACAGTTTGTTTCTTTTCCTCTTTCTTCACAG
Seq C2 exon
ATTGCATTCATTCAAATGGTATAGATTATCGTGGTACAGTAGCAAGAACTGCAAGAGGCAGAATTTGTCAAGAGTGGAGTTCTCAGACACCACATAAACACGACTACTTCACTCCAAGGACTCATCCAAAATCAGGCCTGGAAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004293:ENSGALT00000006829:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005113=Kringle=PU(60.0=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]