HsaINT0095646 @ hg19
Intron Retention
Gene
ENSG00000213071 | LPAL2
Description
lipoprotein, Lp(a)-like 2, pseudogene [Source:HGNC Symbol;Acc:21210]
Coordinates
chr6:160887587-160898320:-
Coord C1 exon
chr6:160898161-160898320
Coord A exon
chr6:160888050-160898160
Coord C2 exon
chr6:160887587-160888049
Length
10111 bp
Sequences
Splice sites
5' ss Seq
TGAGTATGT
5' ss Score
4.43
3' ss Seq
TTCGTTTTTTTTTTCTACAGACT
3' ss Score
9.65
Exon sequences
Seq C1 exon
CACCAACTGAGCAAACCCCTGTGGTCCGGCAGTGCTACCATGGTAATGGACAGAGTTATCAAGGCACATTCTCCACCACTGTCACAGGAAGGACATGTCAATCTTGGTCATCCATGACACCACACCGGCATCAGAGGACCCCAGAAAACTACCCAAATGA
Seq A exon
GTATGTCTTTGATGTTACTTGTAAGAGGAGCAACAGCCAACTTAAGTTCCTCCTAGAAGAGCCTTGCTTCAAGCTAACTTGTTAGGACAAATTTCCCTTAGACCCAGAAGGTGTGTCAAAATGTCCAAACAACTTTGCTTTTGATCAAAGAGTCTGAGAGAATAGGTATTTTAGGCTTGCTATCTTTTCTAATAGTCTGATGGAAGCAGAAGGCTACATGGAGCTGATGAGGTCTTTTTAATATAAAGCTCAGGAGAACAAACGATCAAATAGAGTGCCATTCTACAAGGCTCATAAAAGATCAATGCAGTCTTTCACCCATGCAATTCTATCATTCTAACCTCCCTTCCCTGAAGTGAAGGTTGGGTTTGCCATTTTTGTCATGGGTCACAAGTAAATAATTCACATGTGTGTGCATATATATAGAACCAGGTGTGTTCATACAGACTAGTATTCATATATATGTGCTCATATAGGTTGGTATTCATATATGTGTTCATACAGGCAAGTATTCATATATGGTCTAGGGAAATGTGCAAGGTTTTCATGTCTGTCCCTGACTGATGACCAATCACCCTATAGTCTGCACAGCTGCAGGCTATATAGCTATACAATCTGCAGGACACACACACACACACACACACACATAATATAACTATGTGTGTGTGTGTATATATATATATAGTTATATATAGTTATATATATACACCTGTGTGAACACACTGGGTTCTAAGCTCCAGTTTTCTGAAGGGATATGGGTTGCCAGGACAGGAAGAGCAAAAGCAAGAACGTAGATGAGAGTCAGTCAGGAAGTAAACAGATGTACAGATTAAAACGGGCCGGTACATGGACAAAAAACCTGGTCTGACAAAAACTGGCTTTCTGCCATAAAAGACTACAAAAGATATACAAAAAAACTTTCCACATGTTGGACAAGAGACAGTACAGGACTGAGATAATTTAGAAAAGGAAATGAATGAGCGCAACTCCATAACTATTATGACTTTCTTCCTGGAGAACCTTCCTGGACTGAAGGGCAAGGAATTGGAGCCAAAGCCAACCACAGCAGTCTTGCTGAACTGAGGAAAGAGACTGGAGTTTGGGATAGCTAAGAAAATGTGTATTTTCTATGCTAGGTAATAATGAGAAAGAATTTGTGGTGAAAAGGAGCTGAAGGAATATGCATGGAAGTCTAATATAAACTGCATATGCACAGGGAGAAATTCTACAAAGTGGGACAGAGAACCACTACTGGGGAAAGGACAAATTCAGGGAAACAGTGAGCTCAATGGTGACGCCAGAGCTCACGTAGCACTGGGGGATACTGGGGTTCTGATCAGCCTAAGGAGAGACACCTCATTGAACATCTCGGGCATTCAGTAGAGACCCCAGGAAAGTCATACTTTAGGAGCAGGATTTATGCCTTCTTAGAATAAAGGCTACTCCAGAAATACCTTAGCAAAACTTAAAAACCAAGTCTAAAAGGATCCAAATAATCTCCAAGTAAATTAACTGCCTGACAGAAGGAAACTCAACCATCACTGGAGGTAAATAACTGGATCATGGTACTCCGTAATGTGACATTCACAATGAGTGACATAAATTTTAAAATTTAATAGGCAAAAAAAGCAACCATAACTGGGAGAAAAATCAGTCAATACAAATAGACCAACAAATAATAAAGACAATGGAATTGGTAAAGAAATTCAAACTGTGTATATATGATAATTGTGTTCAAAGATTTAAAGAAAACATGGACATAAGAGAAACAAGTGCAGAATACCAAGAAAAAAGCAACATATAAAACAACCAAATGGAAAGTAAAGAACTACAAAAAAGTACGTCCTTAATAAAAAATTCACTGGGTGGTCTTACTCTGAGTTTATACATTGCAGAAGAAAAAGTGAACTAGAAAATAATGCAATGAAAGTCATACAAACAGTCACAGAAGAACAGGAAAGAGATATTGGGACAGAAAAAAATAATGAAAGCAATGACGGCTGAAGACTTTACAAATATGAAGAAAATTATATACTCACAGTTAAGAAGCTCAACTAATCAGAAATAGAATTCTTAAAAGCAAAAATTTATGATTTACTTGGGTATATCATGGTTAAATTGTCCAACATCAAAGATAACCAGGGTAATCTTATTATAAGCTAGAGGGGAAAAAAGATCATTTACATAGAGGAACAGTGATGCAAATGACTTATGCCTTCTTCTCAGAAACAATGAAATAACATCTTTAAAGTGATTAGAAAGAAAAAAAATCAGATCAACCTAGGACAACATGTCCAGGAAAAAAAAAAAAACCTTGAAAATAAATGTGATGTAAATACGTATTCTGCCACCTCCAGAGGAAACAACCAAAAACCAAAAGAATGTTTCCACAGCAGGCTTCTGTAATAAAAGATGTTAAAGAAAGCCAATTAGGTAGAAGAAAAATAATACCAGATGGAAACTTTAATCCATACTAAGCAATGAACAGCCCTGGAAATGGCAAATGTCAATGTCAATATAAAATACTTTTTTTTAATTTAAAGGACAATTTGTGATGTGAATTAATAAGAATATATTGTAACATATGTAAAAGTAAAATTTATTTTAAAAAAGTGGCATAAATAATGTAGAAGATAAATGGAAATATACTGTTATAAGCTTTTTGCATTACCCATGAAGTTATATAATATTAATACATGGTTGAATGTGATAGTTTAAGGTGAGATATCATAACTCCTAGGAAAACCACAAAAACTTAAACTGAGAGGAATGGATAATAAGAGGAATAGTTCACTTGTCCAAAAGAAGGAAGCAAAGGAGGAATAAAGGATAAAAATGATATGGTGTACACAGAAAATTCATGGCATTGTGGTAGATATAAACTGAACCACCTTATGACCACCTTATGAGTATATTAAATATAAAATGATTAAACACTACAAATAAAAGGCAGAGACTGTAAATTGAATAAAAACTGCAGCCTAATTGTGTTCTTTTTATAATAAATGCCCTTTCAGTGTAAAGACCTACAAACAGCAAAATATGAAAAATGATATATACCATGAAAACCTGAATCATAAATAAACTGGAGTGGTAATATTTATAACAGACAAAGTTGATTTCAGGACAAGAAATAATACAAAAACAAAAAGGACACTTCATAAGAAAAAGGGTCCAGTCACGAAGACATAACAATGCTCAATGTGTTGCACCTAATAACAGCAATTGTGAAATATGAAGCAAAACTTTAGAACTTAGTTCTTGACAGAACTAAAGAGAGAAATAGATAAGTCCACAATTAGAGATGGAAATTTCTTCATTTTTCTCTTACTATTGTTATAAATCTTCCAAAAACAAAATGTAAAAGAACACATTCATACAAAATCAGAAAAAATATATAAGATTTAAAGTAAAACATCAACCTATTTAATACTATGCCAAACTACAAAATACACATTCAAATGTGCATGGAACATGCATCAAGGTATACCATATATGTGGCCTTACAAAAGTTTCAATAAATTTTCAAGAATTACATTGATACATAGTATGTTTTCTGAACACAACAGAAAGAAATAAGATATAAATAACCAAAACATTGGGAAATTGCTGAATATTTGGTAATAAAACAACACATTTCTAAATGTTCCATGAGTCAAAGAAGAAATCTCCAAGGAACTTGGAAAAGTTTTGACCTGAATAATAATAATAATAATTCAGTATACTCAAACTTGTGGGAAACAGTTAATGTCTTTATACATTTACAACTTTAAATGCTCTTAGTAGACAATAGAAACATTTAAAAATCAATGATTTGAGATAGCAATTCTCAAAGCAGAAACTTGGGGACTCATGAGATCCCCTCGGAGAATCTAGGGAGATAAAATATTTTTAATTAAGAAACATTTTTTATTGGCCCTTTTCACTTTCATTTTCTGACAAAGGTACAGTGAAACTTTCCAGCAGCTACATAATGTGTAGTGGAATCATCTCTCTAATGGCTAGGAAAATGTATGATTGTCTATATTATGGTTCAAAAAATTCTCTGTTTCGGTTTCGATTGCAACAATATATTTGCATATTTGTATATATTACAAAAACTAAAGCTCTTTGGGATCCCCAATACTTTTTAAGAATGCAGAGTGATCCTAAAAATAAAAATATTGGGAATTGTTCATCTAAGAAAGCAATTTAAAAATCTAGAGAAGAATACTGTCTATAGTAAACATAAACACAAAAATACTTAATAAAATATTGAGGTATTGGATCTAGCAATATATAAAAAGCAAATAAGACCCAAGGTAAGTGAAAGAAAGGAAATGATTAAAAAAATGAAATTCAATGTAAAAATAATAAACAGTTGAGTAAATCTGTGCAACAGAAAGTTGGTTCCTTGAAAATATCCTTACGATTGATAAACCTCTGGCTAAACTGATGACAAACAAAGAAGGGAGAACAACCACCACCATCAGGAATAAAAGAGAAGAGGAGTTATCACTACAGAATGCTACAGGTATTAAAGATAATAAGAAAATACTCAGAACAACTTATGTTAACAAATCCAGTACCTTAGATAATGTGGACTGATTCCTTAGGAAGAAAACAAATATGCAGGTCAGACACTGAATAAGTTGAATTGCTAAACAGTGTGATACCTATTCAAGACTACGTATGTTTATATTCCTTAATAATACATATTTTAAAAAATCAAAACACTTCCACAGAGAAATCTCTAGGCCCAGATGGCTTCATTAGAAATTTTGTTATTTATGGAAGAAATAATTCCAATTTTTCACAGTATGTTACAGAAAATAGAGATGAAGGGAATACTTCTTAACTCAGTTTGTGAGAACAAAAAAACCCAGTTAAAAAAGTACACAGGATATTGAAAAAAAAACTGCAGAATACTGTCTATAGTGAATAAACACAAAAAGACTTAATAAAATATTGGGATATTAAATCCAGCAATATTAAAATGTATTTTTATCATTAATGTGATGAATATCACAAAAAAACTGGAGCTTCCCTTTGAGAATGCAAGGTTGATTTAACATTTGCAAAACAAACAATGTAATCCAACATAATAACAGAATAAAAGTGATAAATCACATGATATCCATAGATGCAGAAGGAAATATGAGAAAATTCAACACTCTTTCATAATAAAATGTCTCAGCAAACTAGAAACAGAATGGTACTCCTTTAACCTCATAAAGGGCATCTGTGTAAAACCTCCATCAAACATCATGTTAATGGTGAAATATTATTGTTTTTTAAGATTGGGAATAAGAAAGATGTTTGCTCTCAATACTTCTCATCACCACTTCACTACAATGGTCACAGCCTTTGCACCAAGACCCAAAAATGAAAACAAAAAGAAAGAATGAAAAACCAGAAGGAAAACCTGATTAATGGATGCAGACAGTCCTAAAAAATATACACATGCTCTGTGTATAACAGTTAATTGGTATTCTGTATACTTTCTATGATCATTTGGAAAAATAAATGTTTTAAAGCAATATCACTGACAATGTTATCAAAACCAAAAAATATTTAATGATAAATTTAACAAACTATGCACAAGGACTATACAGCTTGCACTAGAAAACGTTGTCAAGGAAAGAATTAAAAGATCTAAATAAAGATACACCATGCTTATAGATTGAAAGGCTCAATATCACTTCTCATCAAATTGATCTTTGGATTAAACTCTCACCCAAACACTATTGCTGCAGTCCTTTTTTGGAAAAAATGTGGAGGACTTACATACCTTAATATAAAGACTTATAAAGGTACAAGAATCAAGACGTGGTATTGGCCAGGACCCTTGGCTCATGCTTGTAACCCCAACACTTTGGGAGGCTGAGGCAGGAGGATGGCTTGAGCCCAGGTGTTCAAGACCAGCCTCAGCAACAGAGCGAGACCCTCTCTCCACAAAAAAAAATGAACCATTAGATGGGTGTGATGAGTCACACCTGTAGTTCCAGCCACTCAGGACACTGAGGGGAGAGGATCACTTGACCCAGGAGGTCTAGGCATGAGTGAACCTTGATCATGCCACTACATTATAGCCTGGATGACAGAATGATACCCTATCTCAAAAAATAAAAAGATATGCGTTATTGGCAAAAAAGTATGCAAAACTAAAAAGGGATGGTCCAGCACCAGACCCACATACATATGGTCAATTGATTTTCTATATAGATGACAAAGCAATTAAATGGAGACAATAATCTTTTACAAAAATCATTCTGAACCATTTGGATATCCATGATAGAAAACAAAAACAGACCTTGACTTTTACTTTTCATCTCAAATTAATTTGAGATATCTCTTCCACCTAAGTGTCAGAGCTAAAACTGAAACTGAAATATGAAAGTTCCAAGAGAAAATATAAAATCTTCACAACCTTGGAGAAGGCAATTTTTTTTGACAGAGGAGTCATTAACACTAACTATAAAAGAAAACAAATTATGATGTGGGCTTTCATAAAATGAAAACTCATGCCCACCAAAAGTCATTTTTAAGAAAATAAATAAGCAAATAACACATGAGAAGAAAAATGCTCTCTTTCTATCTATCTGACAAATGGCTTGTGTCCAGAGTATAGAAACATTTCTCCCACTTGCTAAACAGGGGACAAACAACTTAATCAAAAAAGGCAACAGATTGAATAGGCATTTCTCAGGGATGGATACACACAAAACCAATAAGCACTTGAAAAAATGTCCAATATCTCAGCCATGAAAAATAAAGAATTATAACCATCATGAGATGTCACCAAACACCCAGTGGACATGGATATTATTAAGAAGACACCACAGTAACTGATGTCACTGATGTAGAGCAAGGATATGCAACTCTCTCGTATGTTGGTGGAAGTGCAAAATGATAAAACCACTTTGGAAATCAGTCTGATGATTTCTCCAAAAGTTCAATAAAGACACATCTACTCTACAAATCTGCAATTCTATTCCTGAATATTTACCCAACAGAAATGAAAACATAATTCCACAAAGAGATCTACAAGAATATTCATAGCAGCTTTATTTTTTATACCCCAAACTGTAGGCAACTACAGTGTCAATCAATAAGAAAATGAATAAATAATTTGCGATCTATTCATACAATGGCATACTATTCAGCAATAAAAGGGAGCACATTAATGATACTCTCAAATAGCATGGATGAAGCTCAAAAATATTACATTAAGGAAAGATGTCAGATAACACAAATGAACATTATATATGAGTCCATTGATATAAGGTTCCAGAAAGGCAAAAATAATTTCTCTTGAAGGAAACCAGTATCATTTGCCTCTGGCCATGGGAAGAAATTAGCAGAGATTGATTTTGCCGTAAAACAAAAGTTGTTTCTGGGGTGATGTAAATGTTCTGTGTCACGATCGTAACTTGCGAGTTACACAAGTGTACATGTTCATCAAAATTCATCAAACTACATCTAAGATCTGTGCATTTGACTATACATGAAAGTGTACCTCAGTTGAAAATAGATAAAAAAATCTCCTTCGAATACCACACTTGCTAACATATCCAGTTGCTTGGAGAACCAGCCTCCTGTAGCTGGGAGTCTGGGCTTGAGACTGGGTCACATGTGTAGAGTCTCTACAGAGATAGTGTTGCATTCCCATGGTACATAATACATTTCAAGTTTTCTCAGACAGCCACAGGCCATGAATGTGAGGATTCTGAGAGGTTGAAGCAACATTCCTGGGAGGAACGAAGGGGAGCACATTCTCCAAGATGCCCCCAACCCTGGGGTCCTCACCTGCTGTGCCTCTTATTCAATTTTTTTTCTGCCTCCTCCATAGTCAATTGACCTCTTCAGATCCCATAGTCTAGCCAGCCATCTCCCTTTATGCCTTGGGTCCCACTGTTCCTTCATCTCATCCCCCATTCCCTCAGTCCCGGAGTGGCTGCAGCCAGCAGAGGATGGACTGAGAGCAAGAGAGGAGGTCCTGCCCAGGAACCCATCCTAGAGAAACAGCATCCTGCCTGGGAGCTAGTCTTCCAGTTCAGCTTTTATAAGTCTTGTAGACTCAAACCCACTTGACCCACCTGAAATGGTATTGACAGTAATACTATTTTCATGGTTGTTTTTCATTGTAAATGCAGAGCCTTTTAGCTACACAACGAGTACAGAGAGTAAGGGGGCTGGCCTGGGAATGATATCATCTTGGATGGCATTTCCTCCTTGGAGAAATATATGTTAGTTCCAACTCACATATTAATATACAATCCTATAGAGAGAGATACAGAGAGCTAGAGAGACATAGGTGTATTTGTATGTGCATAAAAAATCTATAAGACACACTTCAAAATCTATACCGGTTCCTCCAGAGGTATGTGTTTGGCAGAAGGTAGAAGGAGGGTATTCTGGTCCTTTCTTAAGCACATTTATATATGATCTCAGTTTTTATATGGAGCATTGATAGGGTTTGGCTATGTCCCCACCCAAAATCTCATCTTGACTTGTAATCTCTATAATCCTGATAATCCCCATGTGTCAAGGGCAGGACCAGGTGGAGGTAACTGGATCATGGGGGCAGTTTCTCCCAGGCTGTTCTCATGACAGTGAGAGAGTCTCCTGAGGTCTGATGGTTTTGTAAGTGTCTGGCATTTCCCCTGCTTCCACTTACTCTGTCCTGCCGCCTGTGAAGAAGGTGCCTGCTTTTCCCTTGCCTTCTGCCATGATTGTAAATTTCCAGAGGCCACCCCAGCAATGTGGAACTGTGAGTCAATTAAAACATTTTTCTTTGTAAGTTACCCAGTCTGTCTCGGGTATTTCCTCATAGCAATGTGAGAGCGGACTAATACAAGCATATACTACTTTTGATATTTTAAAATAAAAATTAGAATCTATCTTTTAAGGGTATGCAGTGGGTTAGAAATTGAGGACCCAGCCGGGAGCAGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGCAAGCGATCACCTGAGGTTGGTAGTTCGAGAACAGGCTGACCAACATGGAGAAACCCCGTCTCTACTGAAAATATAAAATTAGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGACAACCAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAATTAAAAAAAGAAAAGAAATTGAGGACCTTTTTTGTTGTAGTAATTGTATGGTACCCTTAATGGGAATATTTCAAAGTCACTTGTTAAGGCTTTGTTAGAACAAAATGTAGAGGGTGCTGGGTGCCCCTGAATATTCTTCCGCCTCCTGTAACCTGTATTGCTTTGGAATTTCCAGTGGCCTGACAATGAACTACTGCAGGAATCCAGATGCCGATACAGGCCCTTGGTGTTTTACCACAGACCCCAGCGTCAGGTGGGAGTACTGCAACCTGACGCGATGCTCAGACAGAAGGGACTGTGGTCGCTCCTCCGACTGTTATCCAGGTTCCAAGCCTAGAGGCTCCTTCCGAACAAGTAAAAAGTCTGTATCCAGACATCTATGTGCTTGGACAACGGGATGAAAAGACATGAAAAACCACACTGATGCAGAAGCCTTTAGTGCTGCACGGGAGCTCGAGTGTTGGTTGAGGGTCTGCCATGACCAAGGAAGCCTCAATGCCGTCCCTGGGAAAGCCAGAGCTGTGATTTTTGGCACAACTTGCGAGTGTAGTGACTTTAGGACTGGCGCAAAACCTCCAGGGTGCTCAACTTAACCACTCACCTTGTTCTAAAATAGGTTATTTCAGTGTCCCAGTCAAATTCCTATTCTAACATGCTGTCAACTATGTGATTCTTTCCAAGCCAATAAACATTTCCAGTAATTTCTTAAAATAGTGTTCATGGCAGTCTTCAGCAGTGGCTTCTGACTAATGTGGCCCCTGATTCCGTCGTCCTAGAGAAACCTGACATGACTGCATTGATTCCATATTGTCCTGGGTCTATGTGGCTGTGCATATCATCTGCTTTTTGTTTTTGTTTTCGTTTTTTTTTTCTACAG
Seq C2 exon
ACTCTATGTTTGGGAATGGGAAAGGATACCGGGGCAAGAAGGCAACCACTGTTACTGGGACGCCACGCCAAGAATGGACTGCCCAAGAGCCCCATAGACACAGCAGGTTCACTCCAGGGACAAGTCCACGGGCAGGTCTGGAAAAAAATGTAGGGACATGGATGAAGCTGGAAACCATCATCCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTTGTCACTCAGGTGGGAATTGAACGAAAACACATGGACACAGGAAGGGGAACATCACACCCAGGGCCTGTTGTGGGGTGGGGGGAGGGGGGAGGATAGCATTAGGAGATATACCTAATGTTAAATGACGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAACCTGCACGTTGTGCACATGGACCCTGAAACTTAAAGTATAATAAAAAAAAATGTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213071-LPAL2:NR_028093:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)