BtaINT0114781 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17624452-17624902:+
Coord C1 exon
chr7:17624452-17624478
Coord A exon
chr7:17624479-17624814
Coord C2 exon
chr7:17624815-17624902
Length
336 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CTGTGCCGTTCGTCCCGCAGGTG
3' ss Score
13.83
Exon sequences
Seq C1 exon
ATGGACGCCCCGCTGCAAACCGGAATG
Seq A exon
GTAAGGGTTGGAGGTTGTGCGCCTCCGCGGGGACTACGGTTCCCGACGTGCTTAGCGCGCATCAGCGCGGTCCCGCGATAACTAGGCTGCGTCTGTTCAGGCTGAACTACGTTTCCCGGCGTGCACTGCGGGCCGCCGAACCTCCAGAAAGAGTTGACTCCCCTGGGGAGGGAGCCGCGCTGGCCCATTTTGCAGATGGGGACGTCGAGGGCCGAGCCGACTGTGATCTCCGGGGCGGACTTGGCTCCGTTGGATGGAGTCCCAAGCGTCCCGACCCCCGGGGAAGGCTTGGCGGGGCCGGTATGCGATGCGCAGCCTGTGCCGTTCGTCCCGCAG
Seq C2 exon
GTGCTGGGCATGATGATCGGGGCTGGAGTCGCGGTTCTGGTCACGGCCGTGCTCATCCTGCTGCTGGTGCGGAGGCTTCGAGTGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137:ENSBTAT00000007351:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]