BtaINT0114818 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105641216-105643146:+
Coord C1 exon
chr11:105641216-105641293
Coord A exon
chr11:105641294-105642940
Coord C2 exon
chr11:105642941-105643146
Length
1647 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCGTGTCTGTGTTTCGTCAGGAC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GACCCTTCGCTGTTAGATGGCCGGGTGGCGCTTCTCCACGTCCCAGGGGGCACGGTGGTGTTGAGGCAGGGAGACCAG
Seq A exon
GTGAGGGAAGGCAGAGTCTGTGAGAGTGGCCCACCCGGACCCCAGACCTCCCGGACCCCAGCACTGGCACTGGGCGGAGCTCAGAGCAGGCAGCCTCCCCATGGCCCTCTGGTCCCAGTGGACACACGGCGTGCGGTCCGCTGGCACTCAGCGCGGACGGGCTCTTGCCCTCAGGCCTGTGCAGCCGTCTGCAGGCCTATTGACGGTCAGTGAGCCCGCCCTCTTCCTGGGGTGGCTTTGTCCAGCCCAGCATGGGCGTGTCCGTCTGCACATCCACGTTGCTGTTACCAGTCTCACTCAGGAAGTCAGGTACAGGAGGAAGCACTGTGTTTGCTCAGTCCTCAAACCTAATATAGATGAAAAATAATTTTGTTTCTCATAAATGAACGTGGGACTTCCCAGCTGAGGCCAGTAGCAAAGAATCTGCCTGCCAGTGCAGCAGACGCAAGAGGCCTGGGCTCAGTCCCCGGGTCGGAAAGATCCCCAGAGCAGGAGGTGGCAACCATTCCAGAATTCTTGCCTGGGAGACCCTGTGGACAGAGGAGCTTGGTGGGCTACAGTCCATGGGGCTGCAGAGTGTCGGACACGACTGAGTGAGCACAAATGCGTGTAGTTCCTGCTCCCTAGAACCCTGCTTTGCCGGGCGGCAGAGGCTGTCTCTTCGGCCTCCTGTGGTGAGGCCGCCCCCCAGCCCTGTGCCAGCTGGGGGCAGGAGTCCTTCATCTGCCGGGCGAGCAGCAGTGCTGAGGAGGCCTTCCTTGGTGAGCGAGCAGGCTGACCTGGGTCCCCTTTCTGTGTGGTTCCCCGGAGCACGGCCACTGGGGCCAGTGCTGAGGAGGCAGACCACCTAGCATCCCTGGGGGGCTGGGTGGGGGGCACGGAGAGCCAGCCTGGTGGGGACCCTCCCGGGCCTCTTCCCCTCCCCTCTGTCCTTTCTCTTGTTCTCTGGGGACAAGACAGGGGAAAGGCCTGTCCTTTTCCTGAGGGAGGCGGGCTGCTGGCTGGCCCCCGGCCATCGGGCCCTGTGGGAAAGCCTGTCCTGGGTCTTCCACAGCACCCAGTACCCTCAAGAGGCCACGCTGGAGCAGGGGCCGCCTCCGCCTGCCCCCAGCCCCTAGAGCCCTGCGGGGCCTGGCACAGCTGCTTTGCATTTTTTCCATTTCTGACACACCCTTTTCTGCTCAGACCAGGGAGAGGGGTCCCACGGGGTGGGGTGAGCACATGAGGAAGGGTCCTGACAGGGGTTGCTTCAGACTGGTTTCACAGGCACATCTGCGAACGCTGGGCCCTGAGAATATGTGCTGTGTGCCGGGGCGGGGGCCGCGGGGGAGGGGGGGTGTTGTACCGCAGGCTTTAGCCGCTTTCAGGGGCGAGCTCGTGTCTCCGCCTTGCACAGTGCTGAGCTGCTGGCATGTTTGTGGGGAGCAACTCGATGTGTAGGTGCCTCCGGCGTGGGCGGCTGCCGTGGACCGGAGGCGCAGAGCGGGCTCGTGCCCTACAGCTGGTGATAAGTGACCAACATTCCCAGCAAGTCTGGGCCTGGGGCCGGTTGCCGGAGCCGTGCAGTGAAGGCAGCGTGGCGGCCTGCCCACTGCTGGCCCGGGCTCGGGGGCGCTGCCAGCTCCGCCCGTGTCTGTGTTTCGTCAG
Seq C2 exon
GACACGAGCATCCTCTTCGTGGTCTCGGGGCTGCTGCATGTGTACCAGCGGAAGATTGACAGCGAGGAGGACACGTTCCTGTTCATGGCACGGCCCGGTGAGATGGTGGGCCAGCTGGCGGTGCTCACGGGCGAGCCCCTCATCTTCACCATCAGGGCCAACCGGGACTGCAGCTTCCTGTCCATCTCCAAGGCGCACTTCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTTCGCTGTTAGATGGC
R:
TAGAAGTGCGCCTTGGAGATG
Band lengths:
281-1928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development