MmuINT0123190 @ mm10
Intron Retention
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25010714-25011711:+
Coord C1 exon
chr2:25010714-25010791
Coord A exon
chr2:25010792-25011505
Coord C2 exon
chr2:25011506-25011711
Length
714 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCCTTCTCTGCTTTTCTCAGGAT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GACCCATCCCTGTTGGATGGCCGGGTGGCATTTCTTCATGTTCCTGCAGGCACCTTAGTGTCAAAACAGGGAGATCAG
Seq A exon
GTAAGTTAAGAACCTCAATCCTAAAGGTCATAGGCGCTGCCTATCCCTGCAGCTCAGTCTTGGGTGGAGTGTGGGTGGGGACACAGTGGTTGGAAGTTGTCCTAGTGCTACATTGCTGGGCCTCTGGGCACTCACTGTCTTAGTCTCAGGGCAGCCCAGGGTTTAGGTGCTAGGCTTCTCCATGGTTGTGCCCGATACCCTGGTACCTTTTTCTGGAATCCAAGGGGTTCGGGTGGGAAGATTTGCAATGAGTTCCATAATAGATACAAAGAAGTTGGAATTTGGCCCTGCATGTTTTTGTGGATTTTGGATCAAAATATGTGACTCTTAACGCGTAGCTCTGTAGAGCTTCAAAGGGATGGGCCGCCTCCTTGTTTCTGTGGGGAAATGGGCTGACATTTATGTAGAGCAGTTGAAGGGTGTATGAGCAGGGCACGGGTGTGTGTCTAAGATTGAGAAAGGAAATTCCCTGTAATTGATTAAAAAAAAAAAAGCATAGGTAGTAAATAATAAAGCTACAGGACTGTTACAATGCTTTGAGTGGAGACTTGTCTGCGGCTGGGTTACGTACAACCTAGAGTAGGCAAAGAAGCAGCTGCCTGTACCAGTGTGACTGTGGGGCTCAGGAAACTTCCCTGGGCTCCAGGTCCATGGAGCATTCGGGGCTGCTGTCACATACATTGTACTGAAGGTAGCCTTCTCTGCTTTTCTCAG
Seq C2 exon
GATGTCAATATTTTGTTTGTGGTCTCGGGGATGCTGCATGTGTACCAGCAAAAGATTGACAGCTTGGAGGATACTTGCCTGTTCCTCACACATCCCGGGGAGATGGTGGGTCAGCTGGCGGTGCTCACTGGAGAACCCCTAATGTTCACCATCAGAGCCAACCGAGACTGCAGCTTTTTGTCCATCTCGAAGGCCCACTTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833:ENSMUST00000045295:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(16.3=57.7)
A:
NA
C2:
PF0002724=cNMP_binding=FE(73.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGGATGGCCGGGTG
R:
GAAGTGGGCCTTCGAGATGGA
Band lengths:
270-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types