BtaINT0114831 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105669664-105669993:+
Coord C1 exon
chr11:105669664-105669780
Coord A exon
chr11:105669781-105669923
Coord C2 exon
chr11:105669924-105669993
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCC
5' ss Score
4.12
3' ss Seq
TGAGTCCTGTCCCCTCACAGGAC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GACATGATGTCGATGGTGAAGACCATGCTGGACCTGACCTACCCCATCACTTCCATGTTCTCGGGGGCTGGCTTCAACAGCAGCATCTCTAGCGTCTTCAAGGACAGGCAGATCGAG
Seq A exon
GTGCCCCCCCTACCCCGCAGGGACTAACCTGGGAGCCCCAGCAGAGTCCGTGGTCTCCGCCTGCCTGGGTCTAGACGCCCTGGGCCCTGAGAATCGAGGGCTGGCAGCCTGGGTTGGTCCGCCTGAGTCCTGTCCCCTCACAG
Seq C2 exon
GACCTGTGGATCCCATACTTCGCCATCACCACGGACATCTCCGCATCTGCCATGCGGGTCCACACGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(22.8=100)
A:
NA
C2:
PF0173417=Patatin=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGATGTCGATGGTGAAGACC
R:
TGGACCCGCATGGCAGAT
Band lengths:
178-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development