GgaINT0125239 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2075632-2079929:+
Coord C1 exon
chr17:2075632-2075748
Coord A exon
chr17:2075749-2079859
Coord C2 exon
chr17:2079860-2079929
Length
4111 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CAGGCTCTCCTGTGTTTTAGGAT
3' ss Score
10.84
Exon sequences
Seq C1 exon
GTTATGAATTCAGTGTTTAAGACTATTCTAGACTTGACGTATCCAATAACCTCAATGTTTTCTGGAGCAGCTTTTAACAACAGCATCAGCAACATCTTCAAGGATAAGCAGATTGAG
Seq A exon
GTAGGTCGCTTACTATACCCACCCATTGCACACGTGTGTGTGGCTGCACTGCATTCTGTTGTAAGAAATGTCTTCCTTCCATTCTAGTGTTAGGTACAGGGCTGTGAGATGCTGGAAAACACGTTACAAGTAGGGATGTAATGTCACACCGTTATGGTGGATGTTCATTTGTTTTGGTGGATTTAGGAAAACACAAGAGGAATAGTTTCACCACTCCTGTTTGACAAAGGGACCCATTTGGCTGAAGGCAAAAGTTTAGTTGTCCCTGGAGTCAAATTGACGAGATGGTTTTATCATTGCGTTATGGAAGTTGGCTGTAAGAGTCCCTTACGGCACCTTACCAAAGAATGCTGTTAACAGGACAGCAGTAACTTCATGATCCATTGGTTTTTGAAGACTGTGTGTTTATGGACAGCCTATTGAAAGCTGTTCCGCACACGGTGCTGTAACCACCAGGTGCTGTGTGCTCTGCCTGAGCTGACAGCCCCGTGCAGTCCCACCCCACAGCTGCACCTTGTGAAGTCCATCATCAGTGGTTGTCCTTCTCCATCTCTGTGCTCACGGGAGGTTTGGGAACCTTGCAGTCTTACCTCATTACAGCCTTAACCACATTATTCCTGTGTTTGGAATCCTTGTGATGAAAGATTCATAAATATATTTAAAATACACTGACAATTTGGTGCATCATCTGAAACATTCCCTACTTAAATGCAAGGATAAAAGTAAGTGATTAATCATCACACGTGGCTTAAAATAGTGTTGTGCTGTGCAGAGCGGCTGGTGCTGGGAACGAGCAGGTTTTAGTGATAAGACCCGAGACTGGAATGATTGTTTTGTTATCTGGATGGCAGCAGCCATCCTGTTAGTTCTTCAGTCCCTTCCTGGAGCTCTCCAGCTTCTATATTTGGTTTCAGCAGTGCCTGATGGGAAAACCAGAGTGTCGGGTGACTACAACAGCTCTTTCTGCTCAATTTGATGCAGCGGAGGAGCTGCAAAGCGTTGAGGCCTTTGTGGTGGTGCTGAGCTCTGGCTTCTCCCAGTTAACCTGGTGTGAATTATGGCACGGTGTGCTGCGGTGTGAGCCATGGGATGGTGCTGAGGAGAGCTCTGAGGAGAAGTGAATGGCAAAACAGAGGAATGTCTCCTGATCTTGGCTGGCTGTTGCTCCACCTGGTTTACTACCATCGTTGCAGTCAATTTACTGCACTTTGAGGTGCAGTAATTTCTTCCCTACCTCATGATTTTTATGTATTACAGCTGTAACTCCGTGATCTGTCCTAACCTTGTAGTCACAGGAAGGGAAATTTGTCCAAGAGAAATCCAGCTCTGAGGCATACAGAGCATCACCTGTGAGTGCAGTGCCACAGGGCAAACCCTTCAGGCTGCAACCATGGATATCTTCCAGCTGATGGATAAAGGGGAAATGTTGTGTGCCTCTGCAAGGAAGGAGGCATTCACCTCTAATTGCAGTTCATGCTGTTAGTGCTGGTTAGCCAGGCACATCAGTGGAAAGACAGAAGCTGAAAGCTGCCTAAGAGTAAAGGGTAACAAAAGCTAAATTAAAAAGCATTAAGCATTGAATAATTGTGTTCTTAAGCATTATTTTAAGGTGTCCCAGACTCCAAATTTCTGTACTTCTTCAGTAGTTGGAGTGGTTTTGGTGATTTCCAACCAGAAATAAATGTTAGCAAGAGTTGATTACGGCCCTAACAACCTAGGTTCTGTTTGGTGCTTCGCTCCATCCCAGCTGTGTTCTTGTTGGACACAGCAGAACCTGAGAAGTTTCTGCCCATGGGGATATGTTGGGTGCTGACCCTTCTGTCCTTCTAAGAGCTTAAAATTAAGAAGTGGAGCAGATGTTCCTTTTTGCTTACCCTGCATTGAGGTGGCTCTCCTGCATTTCTTCCGCATGCCCTCATCTCTGCTCCACATCACAGCTAGGGCATGTAACCACTTACACAGAGCTGTTATTTCTGTCATTGAAAGGGAGGTTTCCATTTTCTCCAGCACTTGTTCCCTCTCAGCCCTTGTCATGTAGATGTCTCGGGATCCCAGCAGAGCTGTCTGTGGAGCCCTGGTTACACCAGCCCCCGTGGTTGCCACTAGAGATGTCAGCCAAAGGCTCTGGAAGAAGAAACCAGGCTGTTCTGTCAGGAAAGCACAAACAGAAGGCCAGGGCAGGGCCCATGAAAGATCTTTCCAAACTACACAGCTTCTGTTACTCTGAAATTTCCCACCCGTGGTAGGGGGAGGCAGCCTCTGCTCTGGTAAGAGTGCTGTCTGACATCTGCAGGTGCTCCTCATCTGCCATTAAAACTAGTTATGGAGAAGCCTGGCGTCTAGGCAGACTGCAAGGTGCTGGGGGTGGGATAGGAATCATCCTTCCACATAGGGACCCAGAAGCTTCACTTAGGACTTGGAGAGCACCAACCTCTCTAGCCTCAATTCAGAGCCTTAGCTCTTCAGCTCCTAGCTGCAGTGTTCCTTTGGGAAGAGTTGAAGATGCCAAATTGAAGCACGTACGACAGAGCTCTGTGGGGTCTTCTCCTTGGACACCTTCCAAAGCTTCTGGATGTGGCCTGGGCCCCAGCTCTGGGTGGCTGTGCTGGGGCAGAATGGGACCAGATGGACCCAGAGACGCTTCCAGCCTCAGCCATGCTGTGGTTTTGTGCTGGTCCAGCAGAGCACTTGGCTCTGGAGCTTCTGTCCCTCACTGCAGACACACGGAATGCTCTTGCAGACCATCTCAGCTGGAGGCTCAGGTCTGAGGAATCAGGAAAGCAAGTTTTTCTCAAGTCTTGATTCAGAATTAGACAGTGTTCCCTCTCCTAAACAAATGAAGCTGTCTAAGAAATGCCAACATTATGACTGCATGATAGGTCTTGGTTTAGTCTCCTTCATGCATGCATTTGCATGAATATAAAAGGAGGCATAACACAGGCTTCTTTCCCTGTTCCTGTATTTTTGCTTAAAGTGTGGCCAATGCTCTGTGATCATCAGAATATCTTCAGCGTGGAGAGGTCCACCAGTGCTCTTGTAGCCACATTTTATGCATCCTCCCTCCCATGGCATTTATAGCAGATGGATTGTAATATGTGAGCAGCATCTGCTAGTCCTGCCCAGTTCCAGCATCTTTGCAGAGCTGCTTAAGCTCACCAGGAGAAGGGAAAAAAAACAAACACAACAGAACTCCTCCTTGGCAGTTGAGCCTTTCCTATGGTACAGCACCAAAACTTGCACCACAGATACCAAAGAGGGAGCACTTGTCAGCTTGTACTGATAGCTGCAGTCCAAACCCTTGCTTGGCTTTGGTTCCATCAAAGCTGTGCCAGAGGAGGCTCAGTGCTGTGGTCTGACAGCAGGAAGCTGCCCTCCTATTGAGGTTTCCCAGCAATGAGATATGAGTACGAGCATAGAAACCAATGAGAGCTCCCTCCCCCAAGGAACAGAGCTTGTTAATTTTTGTCTTGCCTGAAGCCACGTTGAATAAACGTGTGAAGCACTTGGCTAGGCCATTCTTCTCGTGTACTATCCTGTTTATTAGGTAGGTTACGTACCACACTTTGCTGCTATTTTAGCCTGCAGTATCTCAAGAAATTCTGGGGTCTCTTGAAGGTCAGCCTTGCAGGGTGTTCCTATAGGTAACGCTGTAAGGCTTTGTGCTGCCTTGGACTCCAGGCAGCTCTGGGTCTCAGCAGAACTGCTCTGCATCCCCTGCTGAAATGTCCCCTCGCTTCACCACCATGCAGTACAAATTGCAAGCCATGTAGACTGGAAGAAGGACTCAGAGGACCCAGACTCGTGTCCTCAGCCTCTTTTTGTCTCTTGGGTTCTGGGATTTCAAGAAGGGAAGTGTGGAAGGATAGCAAAAAATACTTGGTCCAGAAGGAAAAAAAAATGGTTTTTTTTCTGCCTTTGTTCTGCATGAGGAATTTGTGTAAGAAACAAACAGATGAACACAAGCACAGCACTGACGGGGTTTCTCCAGGCATTTGTGTCTACAGCTCTGTCAGGATTCAAATGCTGTCGCTGTGGTTTCTGTGTTAGGCATTGGTTTTAGTTTACGTGCAAGGTTACAGATTCAGTGACACCAGGCTCTCCTGTGTTTTAG
Seq C2 exon
GATCTGTGGATTCCTTACTTCACAATCACAACTGACATCACTGCCTCAGCAATGAGGGTCCACACCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(22.8=100)
A:
NA
C2:
PF0173417=Patatin=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]