BtaINT0114832 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012126 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr11:105669924-105670676:+
Coord C1 exon
chr11:105669924-105669993
Coord A exon
chr11:105669994-105670559
Coord C2 exon
chr11:105670560-105670676
Length
566 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TCCTCTGCACACCCTTCCAGGAT
3' ss Score
8.53
Exon sequences
Seq C1 exon
GACCTGTGGATCCCATACTTCGCCATCACCACGGACATCTCCGCATCTGCCATGCGGGTCCACACGGACG
Seq A exon
GTGAGTGCCTCCTCCCAGGGCGCACGTTCCCAGCGGGGGCAGAGTGGCTCCAGGGAAGGGGTGCCCCCCAGAGGAGGCAAGGGACTCGGGGAGGTCTGAGCAAGATGACTCTGCTGCGGGCTTGAAGGCTGCGGGGTCAGTGGAGACGGGGGGCAGAGTGGAGCATGAGGGTCATGGCAGTGTACAGATCGCACTCAGGGTCTGGCACTGCTCGATGGGGATCCCGGAGACCCGGGGAAAACCGAACCATGGGTGGGCAGCTGAGGGCCCTTTTCCAGGCCAGGGTGTTGGGGAGCCTCTTGAAATGAGTCTGGTTGGAAGTGAGTAGGGTGGCAGAGCCTGCAGAAGGGCGTGGCCAGGGGAGATGTGGGGCGCCCCGGAGCAAGTCCGGCCCCACCAGCTCCCTCCAAGGAGGAGGGTGCCCAGGAGGGGTGTCATCTGCCCGGCCTGGCACCCTCTGCCGGGCCAGGTGTGCAGGGGCCTCAGGACCTGTCTGGGCGAGGCTCTGAGCTCATGGCAGTGGAAGTCTGCTTCCCTCTCCCGGACTCCTCTGCACACCCTTCCAG
Seq C2 exon
GATCACTGTGGAGGTACGTGCGTGCCAGCATGTCCCTGTCGGGCTACATGCCCCCACTCTGCGACCCCAAAGATGGGCACCTGCTGATGGATGGGGGCTACATCAACAACCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012126:ENSBTAT00000016089:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
NA
C2:
PF0173417=Patatin=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGATCCCATACTTCGCC
R:
GGGAGGTTGTTGATGTAGCCC
Band lengths:
182-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development