RnoINT0114537 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2258061-2258792:+
Coord C1 exon
chr3:2258061-2258130
Coord A exon
chr3:2258131-2258675
Coord C2 exon
chr3:2258676-2258792
Length
545 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
AGATCTCTTTGCTGCTCCAGGCT
3' ss Score
5.45
Exon sequences
Seq C1 exon
GACCTGTGGCTCCCCTACTTTGCCATCACCACCGACATCACGGCCTCTGCCATGCGGGTTCACACAGATG
Seq A exon
GTGAGAGCCTTCTCCAACCCAAAGCACCATAGGGTCAGCTCAGGCAGGCCAGCGGTTCTAGGACAGCAGGCCAGTGTAGGAGTGTGGACAGGTGGTTCCACGAGACTGTCGAAGGCACTGAGGGTCTTACAAAACAAGCAAGAGTCACAGGCACATGCAGATAAGGTAGAGGGTGCCTCTGCCACAGGAGCTCTCAGTGAGTCAGGGCAGTCAGGAACAAGGCTAGCTGGTGGGTAAAGGAGCTTCTGGGAAGGGAGCAAAAGGAGGGGTATACTCAGGCGTAAGGGTCTTCCCTTGGGCAAAGCGGGATTTCTGGGGACCACAGAGGAATACTTCAATGCCGTCTGTTTTTGAGGCAAAGCGCTTTGGGGATAAGAGGTCTGGAGGTCTGCCAGGCTGTGTTCTCCCTGGAGGTTGGACCTGTCCGCTCTCAGGAGGACAGAGCTACAGCTCTGATTCTCCAGTGCAGGACAAGGACCACAGAGGGCAGAGAAAGGCTTCTTCCTGGCTGGCCCCTTTCCCACCAGATCTCTTTGCTGCTCCAG
Seq C2 exon
GCTCTCTGTGGAGGTATGTCCGTGCAAGCATGTCCTTGTCAGGCTACATGCCCCCACTCTGTGACCCCAAGGATGGACACCTGCTGATGGATGGCGGTTACATCAACAATCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
NA
C2:
PF0173417=Patatin=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTCCCCTACTTT
R:
GGAGATTGTTGATGTAACCGCCA
Band lengths:
184-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]