BtaINT0114988 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19406342-19406705:+
Coord C1 exon
chr3:19406342-19406398
Coord A exon
chr3:19406399-19406592
Coord C2 exon
chr3:19406593-19406705
Length
194 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CTCTTGACTCTCTTTCTCAGTGG
3' ss Score
8.35
Exon sequences
Seq C1 exon
CAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAG
Seq A exon
GTAATGACAAACTTACTGATGGACTGTTAATTGTTCAAGCTTTTACATTAAATCCCTTATATTTGGGGTATAGACATATGCATTAACTTGAGAGGAGAAAAGAGGGACCTCTTTTTCTTTATTAAAGCCTTGAAGCTTAACTCTCAGTAGTCATTGCTGCATTTGTCTGACATACTCTTGACTCTCTTTCTCAG
Seq C2 exon
TGGAAGCAAGCTGGCCTGCACTTCATGTACCTTTGTTACCTCTGTGGGAGATGCCATGGCTAAGCATTTGGTATTCAACCCTTCTCATAGATCCAGTAGCATCCTGCCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGTTCCACGGAAGAGCC
R:
TGGCAGGATGCTACTGGATCT
Band lengths:
164-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]