GgaINT0140054 @ galGal3
Intron Retention
Description
NA
Coordinates
chr25:1964344-1964808:+
Coord C1 exon
chr25:1964344-1964401
Coord A exon
chr25:1964402-1964695
Coord C2 exon
chr25:1964696-1964808
Length
294 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ACTTTCTTCTTGTTGTACAGTGG
3' ss Score
6.92
Exon sequences
Seq C1 exon
ACCACGTTCCCCGGAAGAGTCCCAAATACTTGGCTTTGTTCAAGAACTACACTGCTTG
Seq A exon
GTAAGGGAAGACTTGTCATCTCACTTTAATCACCCGGGGATCTGGTGTGCATTCATTTCCTGATCTGTTGTGTTCTTTACTTTCACATCTGCTTCTTAAGAAACAGTGCTTAATATTTGCAACGCAGCAACATAGATCAAATGAAGGCAATCACTGCTGCCTTCCAGAGGGAGGTCAGTGCCTTAGGGAGGGGGCACTGCAGTGCTGAAGGGTGATATTTTTTCCCTGGTGTGGGCATGCACCTCTTCTAATAGCTAACGCTGATACAAAGCTCACTTTCTTCTTGTTGTACAG
Seq C2 exon
TGGTGTGAAGCTGTGCTGCTCCTCCTGCCTCTTTGCGTCATCGGAGGGTGATATGATGGCCAAGCATTTGGTCTTCAACCCATCACACGAGTTCAGCAACATTATTTTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000888:ENSGALT00000001302:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCGGAAGAGTCCCAAAT
R:
TCGGAAAATAATGTTGCTGAACTCG
Band lengths:
164-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]