BtaINT0114993 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19390594-19392149:+
Coord C1 exon
chr3:19390594-19390702
Coord A exon
chr3:19390703-19391858
Coord C2 exon
chr3:19391859-19392149
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCTTTGTCTCTCTTTTGAAGCCC
3' ss Score
9.55
Exon sequences
Seq C1 exon
GGATTTCCTGTAAGAAATGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGTTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTCCCAG
Seq A exon
GTAAGGAAAAATGTCTACCCATTTGGAATAAACCAGCATCCAAAAGACTTGTTTTTGTTGTTTCTAAGTGTTGAAGGTCATTTAAAAAGTATACTTTCTGAAACTACAAAAATCATATTGAGTTAAGCCCCATTTTTAAAAAACTTCCTAACCTTTGGCCAGGGTGGTAATTTTATTTTTCTTTTTAACTTTTTACCACCTTTCATGAGGTAGTAAAACAGGGTTTTTATAGTTACTTTCCTGTTTCTGCTGTTTTATTCAGCTGTTGTTTGTTATCCTGGAGGACTGTTATTAATGCAAACTCCCAAATTCTGTATTCCTAATAAGTCTACTTACTTACATGGTGGGCTTAAAAACTTATTTTGCTTGCATTTTACAGCATAGATTTGGAATATAAGTTAAACAAATGGCATATTCTTTGAGGATGAATATTGCTAATGACTAGTGGTGGGGTTTTTTTGTTTTTGTTTTTAAGAAATTGAAAGATAATTCTTTAAAATCTTATAATCTTGCCCCCAGTTCTATATTCAGTGTTTACTACATTTTGGGCCAAAAAATACTATATTATTTTAGTTGTGGTAAAGGTAGCTTGTCTTCCTAAGTTTTTGTCATTGTTCTCAGAGCCCATTGGGATTTTGGCCTTCAGGTCTGAGCTTATCCTATCTAGTTCTGATATTTCTTAAATACTTGTAAGTGAATTGTCTAGTTGATCCAGGAGACTCACCTTTGGGACATCCTAGTAGAATGGCATGCATAGTCTGTCTTCTCTGTGAGTTTGTGTAAGAGAATGAAAGACTCTTTAGTATTCTGAGAAAGAAGGATTACTTTTTTCAGAACCAGCTCTGCCTCTTGGCCTATGTATACCCATACTGCTTCCCACTCTATACCCATTATTCTCTTCCAGTACCAAGGTCAGGCTATTCATGATTTACTCTTGGAATAGAAAAGGCAGCGTGCTAAGGTGTTTGGGGAGGAGTTGATGGAAATCTGCTTTCACTGTGATGTTTGTAGGGCTGATTACTGAGGCTAACTGCTTTCATCAGTTTGGGGAAATAATCTTTTCCTATTCTAGTATTTCCAGTAAACACAGAGGGAATGTGTTATAGGAGAGCTCACTAACCAAGATTTGGTGCTTTTCTTTGTCTCTCTTTTGAAG
Seq C2 exon
CCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCTGTGAGGCCAGGCTCCACGATGCCTGTGCGGCCCACCACCAACACCTTCACCACCGTCATCCCAGCCACTCTCACCATTCGAAGCACCGTCCCACAGTCCCAGTCCCAGTCGACCAAGTCCACTCCCAGCACTTCCACCACACCCACTGCCACACAGCCGACCTCACTGGGGCACCTTGCTGTCCAGCCCCCAGGCCAATCCAGCCAGACTCAGAACCCCAAACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.878
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGGATTGTGTTGAACGT
R:
GTTTGGGGTTCTGAGTCTGGC
Band lengths:
351-1507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]