GgaINT0139833 @ galGal3
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
NA
Coordinates
chr25:1956718-1957595:+
Coord C1 exon
chr25:1956718-1956826
Coord A exon
chr25:1956827-1957415
Coord C2 exon
chr25:1957416-1957595
Length
589 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTATTCGTTTCTGTTTGAAGCCC
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGATTTCCCGTGCGGAACGTGCGGCCTGTGCAAAACACGATGAATCAAGTGGGAATTGTCCTGAATGTACAGCAGGGTCAGACAGTCAGACCCATCACCCTTGTCCCAG
Seq A exon
GTAAGGACTGAAACAAATCCAAGCCATGCTTCTGTCATCTTTCTTTACAGAGTACCAAGGACAAATATTATATATTTGAAATACGCAGCTGTAATACAAACCTTTGAGCTCTAGAGAAGGGGATTTTTCAGTTCTGTAGCTGAAGAAGTGTGTGTATTAGTGGCTCCAGTGCTGCCAGTTGTGTCCAGCTGAGAGTGGGCCTTTTGACAATAGTAATAAACTACTTGGTAGACAGGGGTCTTCCAAGTGGAAGGAATGCCTGCCTTGCAGAACTCCATGACTTCTTCCAAAGTCACATGCAGAGTCTTGAGAGATGTGACACGTGGGGATGTGGTTTAGTGGAGATGAGTTGGGGTTGGACTTGATTGTCTTGCAGGTGTTTTCCAGCTGTAATGATTCTATGATTTTGTGATTCGTGTTCAATTTCAGGCTGGTTGGGAAAGAAAACTAAGGGGCTGAACTTGTAAAACTTTCACTGAAATGAGTGGGAATTTTGGGAGCTTGGCAGTGGTAGAAAATAGATTGTACTCTGGGCAAGGGACGGAATTCATTTATTTGATCTCCCTTCTTTATTCGTTTCTGTTTGAAG
Seq C2 exon
CCCCAGGTACACAGTTTGTCAAGCCAGCAGTTGGCGTTCCTCAGGTGTTCTCCCAGGTGGCCCAGGTGAGACCAGGTACGACCATGCCGGTCCGACCCACCACCAACACTTTCACTACGGTCATTCCGGCCACGCTCACCATCAGGAGCACAGTGCCGCAGTCCCAGTCACAACAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.475
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGCCTGTGCAAAAC
R:
TTGCTGTTGTGACTGGGACTG
Band lengths:
270-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]