BtaINT0114997 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19396728-19401464:+
Coord C1 exon
chr3:19396728-19396882
Coord A exon
chr3:19396883-19401363
Coord C2 exon
chr3:19401364-19401464
Length
4481 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
AATTATTTTTCTTCTTACAGCCA
3' ss Score
9.05
Exon sequences
Seq C1 exon
ATTTATGAACCATATGAAACATCATGTAGAGCTTGATCAGCAGAATGGTGAGGTGGACGGTCATACTATCTGCCAGCACTGCTATCGTCAGTTTTCCACTCCCTTCCAGCTCCAGTGCCACTTGGAAAATGTTCATAGTCCCTATGAATCAACTA
Seq A exon
GTAAGTTTGGAAGTTCATAAACTCTAGGGGTGTACTTTGTTCTTCACTCAATGAATGGCACTAGCGGGGAGCCCTTTATATTTCTTCATATGTGGGTAACAGTGTCAGGTAGCTTTTTGCATGTTTATAGTCAGTACTTCACTTACTCTGTTTTCCTACAAGCCTGGCTTCTATTCTGTTCAAGCTTGAGTTGAGTTCAGTGCTTGATTCCAAATATTAGGGGCCTTGGACCACTGTAGAGAGGTATATTTTAAGAGTTTGTTACCTAGATTGTTTTATAGAAGGAGCAAGCATTTGTATTTGGGTCTCCACTTTAGTTAGTAATGTCGTCGTTTTTATGTAGGATAAAAGATAATATTATAAAGTACTTTACCATTAAGACAGTGCTTTCATGAAATATAAGATAAGTTGGAGTGTTAGCTACATCTTAAAGGTGAGAAACAGGCTGAATACAACCCCAGAAATACTTAGTCATTTACTTAAGAGCATACACTTCTTGTAAGGTGACGTGAGGATTTGAATCCAGTCTTCTAGAAATATTTCCTTTATCATATAAGTGATTTCTAGTTTTGTTGAAGAGACAAAAATTGCTTAACTAGGGAAATCTGAGAACAACACTATGTATTTACTATAAATACAGACATTGGATGAAATGAATGATAGGTAGAATAGTTCAGAGAAGGGAAAAGATCCTTGTGGCTGGATTTCACAGAATAGGTAATGTATAAACTTGGTCTTAAATACAAGAAGGATTTAGGTGGATGGAAAATAGAAGAGATTTTATGTGATGGGGAACAGCATGAGCAAACATGTAGAGACAGAAAAATATGCATAATATTGATGCTTTTGCTGCAGATTAAAAATCTTGATTAAAATTGGATTAAACATTAAGGACATCTATTATTAGATCCTTTAACCGAGAAGACTTAAGGTAGAGTAAGCATCACGCCCAGAACTTAAGTCTTTACTTTTCAACAGTTTTCTTGTGTCTGGCTTTCTAGCAGGAAGGCTATGTTAATCTCAGGAATTCATTCAGATGTAAGATTGTGCAGATGAAAAAGAGGCCATGTCTTCCTGTCTTTCCTAAGTCTGTTCCTTCAAGGCAGAATTGTTTTCCCTTTCTCTCTCTTTGGCTGTGGTCATATTGTCAAGGGAAGTAGGATTGTCATGAGTGGCTCAGATGAGTGCTGATCAACAGAAAATATAATGAGCTACGTATGTAATTTTAATTTTTTTAGTAGTCATTTGAAATAAAAATATTTTAAGGTGAAATTAATTTTAATAATATATTTTATTTAATTCAAAATAGCCAAGATAATATTAGCATATAATCAAAATTTTTTAATTAATGAAAAATTAAAAAAAATTTTTTTAATCTAGTGTGTATACCAGAGCAAATAGTCTCAATTTGAGCTCATCCCATTTGATATGTTCACTAGCCATGTGGATACTGGTGGTTACCATAGAAGGCAGTGGAACTTTGGACTAACAGTTTGTGAGTGGAGTAGATATTGGTTTCAACCATCCTAACACCACATGTAGCAGAGTAGCATCTTGGTCTAAGTTAGGTCCCACGTTCTTCACTGTCAGTGATGGGAAGTCCAAATTACTCATCTGAATCTCCCAGTGAAAACATCTGCTTTTATACAGAAATCTGGTGGAGTGTGTTATTCCACTTACATATTGTACTATACATAACAAGATAAGTTCTTCCTAATGGGAAAAAACAAAGTGGGCAATGCAGAACCTCATCAGTCTTTCCCTTTTAGTTTACCACTGTTTTATCCTTGACTTTGAATTTTTTGAGTATCTTATGACTTCAGTTTATACTGATGAAAAACCCAGACATTGTTGATCCAAACAGGTAAATGCCTTTTCTATGCTTTAGTATATATCAATTTTACTCTTGGATTCTTTTATAACTCCCTTTTTTTTTTTTGCATTTGTGGCAGATCCTTCATGAAAGTAGCTTATTTTTTCGTGTTAATATCTTGAGATCCATTGTTTTCTTTTTAGTTTTGAAAAAATTTTTTCTTTTATTTTCTGAAGTGTTTTTAAATTAAATTATAGACATAATGACGTTTCACTTCTAAATACTTCATTATATATCTCTGAAAAATAAGGACATTTAAAATACATAGGTATTCCCATCCTCATCAGAAAAGATGGCCTTTTTCTATCTGTACCTCTCAACGTGGGGCCAAGAGGTGAGAGAGCTGACGTTTACTGAAGAGTTAACACCCGCTGCAGATCTTGTGACTCTACATGGACCACAGTCAGGAGTCTTAGGGAACACTTAGGATGGGTCCCTGAAGAATGTGGGTTCTGAAGGATGATAGGAAGAGACACGCTTGGTTATTCACATGAGCAAATGCATAACTACCCTACTCTGAAACAGTTAGACGGCTCTGCGTATGTAAAATCACTCTTGCACGAGCCATGGAGCAGACGCCATGGGAGACACCCAGGGAGAGTAGGACTTCTGCCACAAGCCGAGGCCAAGTGCGACAGAGTCCAGTGGTCTTCCTGGGGTTCCATGGCCTGAGCAACCAGGTCTGTGTTCAAGCTACGGGTTCTAATGGAAATCACACTTTGTGATAACTGCAAGTTTAAACAAGTATAAACTTGATCAGTCCAGCTGATATAGTTAACACTTTAGTAAACTTTATTTCCAACCTGAAAGAAATAAACAAAATAAAATACATAGCCATAGTATCTTTATCAAGACCTAACAGAATTAATCATAAGTCTTTAATATCATCTATCTTCATTTTCAAGTTTTCCTGAATTGTCTCCAGAACATCAATGGGTTATTGTGTTTAAACTTGTTTAAGAGGTAAGGTTGAGGGATGGATGCATGCTTGTGTTCACGTGTCAGGAGGATCCTTTGTGAAGAAAGACTCGGGAAAGGGAGAACCCCTTGTTTGATAAAGTCATGGTATATATACATGGAGATTGGATGAACCTTAGAAAGGCAAAAAGGATCTGTCCGTCCAAATTTGGAAAGCAGGAAGCAGAATCTATAGTATTTCACCCCTATTTCTCAAAGCAAGAGACCGAGGTAGGTGTTAAGGAGATGAGAGTGACAGGGCTGGGAGGGACAGTGTTAGGATGGCCACTTTGGAAAATCAGTCAATTATCCCTCTTGAATCTTCTTCAGATCAACTCCTTCCCCCTTAGAACAGGTGTGAAAGGTTATTCGAGATCTCTTAAATCCACTGATGGCTTTGGTTCCTTTCTCACTGATTTTCTTTGTATGAGATAATACATATAAATCTTAGGATATTGCTTATGCATTAGAAATTGTTTAATAAATGTTACTATTGATATTTTAAGACAGATATAACAATAGAGCTGATATAGGAAAAGCCTTTAAGGGTGAGTGAGGTTGCCCAGGGAAAACACAGAGACTAGGAAAAGGCTTGGACAGAAGGCTGGGAAATACCAATGCTTTAAAGTGTTCTAGATAAGAAAAAAGAAGCTAAGCGAATTGAATTGAGAAGTAAAGGGCAGGAAAACAGGAGAAAAGATTGTCATGCCACTAGTTACAGTTTCCCAAACATGTCATGTAGTTCCATGCCTTTGCTCAAATTCCTCTCTTGTCTTCTCTGTCTGGCAAATCACTATTCTTTCAAGGTTCAGCTTATGTTATCAACTTTTCTCATTCTAGGCAGAATTTTTTATTTATCTTGTTCTCATACCTGATGTACTTCTGGGAAGTGGTTCTAAATGGGTTGCAGATACCTTTGAAAATCAACACAAAACTTCCCCCCAAAATAAACATTTCACTCTTTGCAGATAATTTCAGGGGATACCTGGGTTCCCTGAGATCTCTTCCTTGGACCCCAGATTTAAAACCCCTGGTTTTTGCTCCTTTGTTTTATTTCAGCGTCACTCATTTGGGAGTGGTGGGCAGGGGTTAGACAGTAAATAAGCGCTTAGAACTTGTAATTTACAATTTTTGTGTTTGCAAACCTTGAAAATAATTTTAGTAATGTTAAGAAAAATACAAATAACTGTCTTTATTTTGCCTGTATAATTCACAATATGTAGCAATTAAAATATTTGCCAAAAATTTAGAATTGCAGGCTTATATAGAAGTTTGATAAAATGGCTAATTTTAAAGTTTAATTATCTCAGTTTGTTAGTAATAACTCATAAGGCAAGAAATTCTGTTCATGTTGTCAGTCTTTTAAGGACAAATCTGTATTTGTAGATGGTGGACTATTCATGTTTAAATGTCCTGTAGAGAGTTCAAAATCTGGAATGGAGCTTTGGTGAAGACGTCTGAGCTAGAGACAGAAGGATACTTTTTATCAGCGACACAACTGTTGACAACCATTTTAAAGAAAAGAAGAGACCCCATAAGTTACTGATACTATTGCAAATGAAGATACAGGAGTCAGAAAGTAAAGATTATGAATCAGCAGGATTTTGGTCATATTTTCAGGTGTATTTACCAATTATTTTTCTTCTTACAG
Seq C2 exon
CCAAGTGCAAGATCTGTGAGTGGGCATTTGAGAGTGAGCCCCTGTTTCTCCAGCATATGAAGGATACTCACAAGCCTGGAGAGATGCCTTATGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]