GgaINT1022199 @ galGal4
Intron Retention
Gene
ENSGALG00000024479 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr25:2078243-2078710:+
Coord C1 exon
chr25:2078243-2078397
Coord A exon
chr25:2078398-2078609
Coord C2 exon
chr25:2078610-2078710
Length
212 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CTTTTTCTTTTCTTTTGCAGCAA
3' ss Score
12.21
Exon sequences
Seq C1 exon
ATTTATGAACCACATGAAGCACCACGTGGAACTGGACCAGCAGAACGGAGAGGTGGACGTGCACACCATCTGCCAGCACTGCTACAGGCAGTTCTCCACTCCGTTTCAGCTCCAGTGCCACTTAGAGAACGTCCACAGTCCCTATGAGTCAACAA
Seq A exon
GTAAGCTGGTTTTGCTGCTGTAGTTCTGGGTTTGAGAGGGTTTTTGTCTTAGGTTAATAGCCAACCTGCTAAGATTAGTACCTTAATAAAAAAAAAGAGGAGTAATGTTTTTTTTGAGGAACTGTTGTTCAAAGGAACTTGGTGTAACGTGGTGGTGTGTGTTCTACCTTGTTGTCCTCCAGCTGTTAGCTGCTTTTTCTTTTCTTTTGCAG
Seq C2 exon
CAAAGTGCAAGATTTGTGAATGGGCATTTGAGAGTGAACCAATGTTCCTGCAGCACATGAAGGACACGCACAAGCCGGGGGAGATGCCCTACGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024479:ENSGALT00000041392:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCACATGAAGCACCACG
R:
CTGGCAAACGTAGGGCATCTC
Band lengths:
252-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]