BtaINT0118734 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034368 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr25:2274226-2275057:+
Coord C1 exon
chr25:2274226-2274497
Coord A exon
chr25:2274498-2274887
Coord C2 exon
chr25:2274888-2275057
Length
390 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACCTCCCCCTTCTCCTCCAGTGC
3' ss Score
10.77
Exon sequences
Seq C1 exon
GAAGGCGCTGCCCGCTGACTACCGCGTGCGCCTCGGGGCGCCGCACCTGGGTCCCAGCTCGCCCCCTGCTCTCCTGGCGCCCGTGCGGAGGGTGCTGCTGCCCCCGGACTACTCGGAGGACGGGGCCCACGGGGACCTGGCGCTGCTGCTGCTGCGCCGCCCAACGCCCCTGAGCACCCGAGTTCAGCCCGTCTGCCTGCCGGAGCCTGGAGCCCGCCCACCGCCCGGCACACCCTGCTGGGTCACTGGCTGGGGCAGCCTCCGCCCAGGAG
Seq A exon
GTGAGGCAGAGGGCAGGGCACGGGGGCACTGGGGGAGGGCCAGGGGCTCTCTCCCCAGCTCGCTCTGACCTCCAGGGACCCAGACATCCTCTCTGTAAGGCCAGGGAGCCCTGGGCTGTCAGGTGAGGCTTTTCCCACCCTCTGCGGGCTCTTCCTGGGTGTCCGATTCTTGCAACCCCATGGACTGTAGCCCACCAGACCGCCTCGGTCCATGGGATTCTCCAAGCAAAAATACTGGAATGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATCAAACTCACATCTCTTAAGTCTCCTACATTGGCAGGTGGGTTCTTTACCACTAGTGCCACCTGAGAAGTCTCTGCCGCCTCTTAGACCTCCCCCTTCTCCTCCAG
Seq C2 exon
TGCCACTCCCAGAGTGGCGACCCTTGCAGGGAGTGAGGGTGCCACTGCTGGACGCTCACACCTGTGACCACCTCTACCACCTGGGCACCGACGTGCCCCGGGCAGAACACATAGTGCTGCCGGGGAGCCTGTGCGCTGGCTATGTCGGGGGCCAGAAGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034368:ENSBTAT00000027425:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCGGACTACTCGGAG
R:
CTGGCAGGCGTCCTTCTG
Band lengths:
342-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]