MmuINT0127461 @ mm9
Intron Retention
Gene
ENSMUSG00000049620 | Prss33
Description
protease, serine, 33 [Source:MGI Symbol;Acc:MGI:2661234]
Coordinates
chr17:23971158-23971835:-
Coord C1 exon
chr17:23971564-23971835
Coord A exon
chr17:23971328-23971563
Coord C2 exon
chr17:23971158-23971327
Length
236 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
ATCTGTCCCTCTTCCCTCAGTAC
3' ss Score
9.15
Exon sequences
Seq C1 exon
ACGGGTATGGCCGTCAGAGTACAGTGTGCTCCTGGGAGCACTGAGTCTGGACGTCAGGTCATCCCACGAGCTCTTGGTTCCTGTGCTGCGGGTGCTGCTGCCTCCTGACTACTCTGAGGACGAGGCCCGTGGTGACCTGGCACTGCTGCAGCTGCGTCACCCAGTGTCCCTGAGCACCCGCATCCAGCCTGTCTGCCTGCCTGCACCAGGGTCCCATCCACCACCAGGGTCTCCATGCTGGGTCACTGGCTGGGGTAGCCTCAGCCCAGGAG
Seq A exon
GTAAAGCATATAGTCAGGTCAGGTTATGGGGGCACCCGACATCCCTTTCTCCTCCATTTGACTTTGAATCCTGGTCTTTCACAGTCCCAGTGTGAAATCCAGAGCGCAAACATTCCTTTTATCAGATTCAAGGAATCCTGGGTTGCAAATCAGACCCTCCCGTTCATCTTTTCCCATCAAGCCCCACTTCAAGCTGTCCTGTCTCCTGATTCTCAGATCTGTCCCTCTTCCCTCAG
Seq C2 exon
TACCACTCCCAAAGGGGAGACCCTTGCAAGGAGTGAGGGTGCCGCTGCTGGACTCCCGAGCCTGTGACCGCCTCTACCACGTGGGTGCCAACGTGCCCCAGGGTGAACGCATAGTGCTACCAGGGAACTTGTGTGCTGGCTACCGCAGAGGCCACAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049620-Prss33:NM_001081399:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACTCTGAGGACGAGGC
R:
GCACACAAGTTCCCTGGTAGC
Band lengths:
303-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: