HsaINT1028205 @ hg38
Intron Retention
Gene
ENSG00000103355 | PRSS33
Description
protease, serine 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr16:2785002-2785646:-
Coord C1 exon
chr16:2785375-2785646
Coord A exon
chr16:2785172-2785374
Coord C2 exon
chr16:2785002-2785171
Length
203 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GGTCCCTCCTCTTCCCCCAGTGC
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAGGGCACTGCCAGCTGAGTACCGCGTGCGCCTGGGGGCGCTGCGTCTGGGCTCCACCTCGCCCCGCACGCTCTCGGTGCCCGTGCGACGGGTGCTGCTGCCCCCGGACTACTCCGAGGACGGGGCCCGCGGCGACCTGGCACTGCTGCAGCTGCGTCGCCCGGTGCCCCTGAGCGCTCGCGTCCAACCCGTCTGCCTGCCCGTGCCCGGCGCCCGCCCGCCGCCCGGCACACCATGCCGGGTCACCGGCTGGGGCAGCCTCCGCCCAGGAG
Seq A exon
GTAAGGCAGGAGGGCGGGGCTCCGAGGCATCCGGGAGCCCCCACGTCCTCCTCCATCTGACTGGAAATCCCAGCCCCTCACTGCCCCAATCCAGGACCCAGCGCGGCTTCTAGGGAACAAAACCTCCTCTCACTCAGAGCTCAGCTTCTCCCACTGGCCCCCGCTCCACGCCTTCCTCTCAGAGGTCCCTCCTCTTCCCCCAG
Seq C2 exon
TGCCCCTCCCAGAGTGGCGACCGCTACAAGGAGTAAGGGTGCCGCTGCTGGACTCGCGCACCTGCGACGGCCTCTACCACGTGGGCGCGGACGTGCCCCAGGCTGAGCGCATTGTGCTGCCTGGGAGTCTGTGTGCCGGCTACCCCCAGGGCCACAAGGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103355:ENST00000570702:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCCAGCTGAGTACC
R:
CTTACTCCTTGTAGCGGTCGC
Band lengths:
305-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains