BtaINT0150378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29001887-29004418:-
Coord C1 exon
chr15:29004320-29004418
Coord A exon
chr15:29002030-29004319
Coord C2 exon
chr15:29001887-29002029
Length
2290 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCCACCCCACCACACTGAAGAGA
3' ss Score
-0.94
Exon sequences
Seq C1 exon
CTCATGTCCACCCTGCCTGCCTCCCCATGCACGGACAGACCTTCGGCCTCAATGAGATCTGCTGGATCACAGGCTTTGGCAAGACCAAGGAGACAGATG
Seq A exon
GTGAGAGGCAGATGCTAGACTGTGTGTTGTGTGTGTGTTTGACTGTATACATGTGTTTCTTTTCTTTTTTCTTTTACTTGTATTTTTTTGTGGCATTTATTTTAAGGCCATTTTTGTTTCTTCAGTATCTTCTGGAGTATCTTTTTCTTCTGTGCAACCTCCTCTTCTGGTTTAGGAAAACCTGCGCTTTTTTAGTAAGGATCATCTCCATGTGGCAGGGAGAGCTCATGTACGGGTTGATTCAACCATGAGCTCTGTAAGTCCTGTGCTCCATCTTGAAGGCTTTGCTTACTTGGGTGTGCTCAATGACCAGAGAATCTGTATCTAAGCCCTTAAGTTCATCATTACTCTCTGTATTTTTGAGCACGTGCTGTAAAAACTCAGCACTCTTCTTGGCCCACTGATCCTTTCCAGCCCCACTGTTTGACCTGAGCACACGTATCAGCTCCATTATTGTGACGACAGAATGGAACACACTGCTTTTTCAAAGTGACACCCTTCAGATACTTGGTAGCTTTTCAGATATGCATACCCTTAATGGCCTGGGCAGTTTCGTTAGTGTTCCTAGAGTGAACATGAAGATTTGAACCTCTTGGTTTGCACAATTTTGTGGCGTCTTCTCGATCAAGTGAATAGTGAACCATTTTTAGAGGTCACCTCAGGTTGCTTATCAGAAAAACTATACATGTGCTTCTGTATATGGGGTGATTTGTAGGGGTATTGAGATGAGGGTCTACCTAGATGAAGGTTTGGGTATATAGATTCATGGGCCTGGATATGAATGTGTGTATATACACACCTACATATACATCAAAGCCGGGCTTCCCTGGTGGTTCAGTGGTAAAGAGTCTTCTGGCAATGCAGCACACACAGGTTCAATCCCTGGGTTGGGAACATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCTGGGAATTCTTGCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATAGGGTTGCAAAGAGTTGGGCATGACTGAAGTGATAGCATGCATGCAAGTGTGCTATAGGGTGAGCACCGGGCTGGGCATTTTTGCCTAATTTGGGGTCCGGAAGCCTGCTGGTGATGATCAGGGGGGCTTTTGGCAATGGTTACAATGGGACTTAATCAGTTTTGGAGGTGGCCTTGGTTCTGGGCTCCATGCCTGTGGCCTTGGTGCAAAGCCTCTCACCTGTGATCTTGGGATAGGACTCCCAAGTGCTTGGGATAGCATTCAGATATCTTACTAACCTCGTCTAGAAAGAGTCAGTAGACTGAGCCTAAAGCTATAGTTGATGAAGAAATGAAGAAGCAGCAGCCGCTCATTCTGGCTGGAAGAGGAGGCCCTTTGGTCCTTGTGTGATGTGACCTACCTTGTTTTTGTCTGGGCTGAAACAAGGTTAGAAAGTGGTTTGGTCTTCCCTCACTTCATCATGATGACTGGGCGGCCTTGTCTGGTGTCAGTTCTGTCGGATTGTGGATACTGGGCAGGAAAGCACAGTAGTCAGCTGGCCTTGCCGTGAGACTCATGAGACTGGCAGGTGTCAAGACCTTGCTCATGGGATGAAGTGACTGGCTGGGAGCAGCCTTGTTCTGACCTTAGCTCTCTAACTGACTAGCTGGGTGCCTGTGCATGCCTGCTCTGTCGCTTCAGTCGTGTCTGACTCTCTGCAACCCTATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTAGCCACACACTCCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCTGCATCTCTTATGCCTCCCGCACTGGCAGGTGGGTTCTTTACCACTAGTGCCACCTGTGACTGTGGGCAAGTCCTTCTTCAGCCCTAAATTTCTCCTTCTGTAAGTGGGTTCATCACACCTGCTCTCCTTAAAGCACATCATTACCAAAAGCAAATAAAGTGATCTATTGTGTTGACTGAAAAGTTCTTTTGGGTTTTCGTTCTATCTTTTCTGTTTTGAATGCAGAAAAGCATTGTGCGCGTGTCAGGCAGCCTGATAGGCTTGTGGGTTTGTCTCTGCATGTGTGTCTCTGTTCTGTGTAGTGATTTGTGTCTGGTGTGAGGCTGTATGTGCTCCTGTGTCCTGGGTGACCCACCATGGGAATGGTGCCCTCCATGCCTGGGAGGTTGCCAGTCTGGGGCCTGGGGTGGGCAGCTGGAAGGCCTCAAAGCCGCCTGGAGTCTCACTCCCTTCCCACCCTCTCTCTCCTCCACCCCACCACACTGAAG
Seq C2 exon
AGAGGACTTCCCCTTTTCTCCGGGAGGTGCAGGTTAACCTCATTGATTTCAAGAAGTGCAATGACTACTTGGTCTACGACAGCTACCTTACCCCGAGGATGATGTGCGCGGGGGACCTGCGAGGAGGCAGAGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development