RnoINT0153337 @ rn6
Intron Retention
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49646328-49648400:+
Coord C1 exon
chr8:49646328-49646426
Coord A exon
chr8:49646427-49648257
Coord C2 exon
chr8:49648258-49648400
Length
1831 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CCACATTCTCCTCACTGAAGAGA
3' ss Score
2.64
Exon sequences
Seq C1 exon
CTCACATCCACCCTGCCTGCCTCCCTTTGCATGGGCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACTGGCTTTGGCAAAACCAAGGAAACAGATG
Seq A exon
GTGAGAGGCAGAAATGAAAGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCGTGTGCATGTGTAGTGGTGTGTGTGTGTGTAGGTGTGGGTACGCACATGAAGGCTTATCTGGGTGAAAGTTTGGGTTATAGACTCATAGTTAATACAGGAACATGGACACCTATGTTCGTTTCAGCACAGTCCACATGGTAACACCTAGGCAAGACTGCCAGGACCCCTACAGCTGATTAGGTGGCTTTACTACTCATGACAGTGAGAGGAGACATGCATTTCATGAAGAGGTTATTAGAGAAACTGGAGAGGTGGCTCAGTGCTTAGGGGCCCATGCTACTCTTCCAGAGGACCTAGGCTTAGTTCTCAGCACCCACATAGTGGCTCACTCCTTCCTGTAACCCCAGTTCCAGAGCAACCAAGGCCCTCTCTGGGCCTCCAAGGGCACAGGGTACATAGACAGAGACAAACAGTACATGCACATAAAATGAAATAAATAAATATCATTAAAGAGACTATTAGAAAAGGCTTATCATAGGCTGAGGGTAGTTTGGGGAGAGGGCAAGCATGCGATACTTCTCTCTATGTTGGATACTACTGAGAAGCAGTGTCTGGAAAACTTAATCTCTTCTAAAACTAAATCGGAATCAGAAGAGGAGCGGTGGGGCCCTGGACTGACTGGGAGAGAGAGCATGTTTGTGGGTTACATAAGGACTTTCTTACATACTGGGTCCTCAACTCAGAGCCTCTGGCTCATGTCCAGGTGTTTCTTTACATTTTATTTTGAGACAAGGTCTCGGTAGGTTACCCTGACTGACATTAAACTCATTTTACAGCCTTGGCTTGCTTCTGATCTGATCCTTCTGCCTTAGCCTCCAGGGCAGCTGAGATTACAGGCGGCACCATGAGGCCTGGCTGGGACACTGTTTTCACCTGTCCTGAGGCAAGATGTCCTCAGCTATAGATAACATCTGTGTCTCTCAGAGGGACACTGGTCTGGCTAGCCTGGTTGTTACATTCAGGCCTATTCCAGCAGTCTCTATTCCTTGGCTTCCTGTGGTAGAAAGCTGACTGACCTGGACACAGACTCCCGACCTTACCTGTTTCACCGATTAGAGAGCAGAGGCCCGTAAATAGTTTCTTCGGTCCTATGTTTCTATACATAGAAATGGGAGATCAAGGCATACCCTAAAATCTTTAGGGATCTGAAAACAAATGGCACAAGGAGATGGCGCTTGGAATGCAGATGAGTGTGCAAAGTCTGTGTGTTAGTCGCTGTGCACATTGCTGCCACAAAATACCTGACAGACCAGCTTAAGGTAGAGGGCCTTACTAGCTCACAGGACATGGTCCCTCATGGCTGGATGTCACAGCAGCAGTGGCGTGGCAGTCAGGAGCAGAGTGAAGTACTGCTACCCAGCTTCCTCTCCTTTTTATGTTCAGTCTAGGACATAGCCCAGGAAGCGGCACAGCCCATATTTAGGATAGGTCTTCCTACCTCAGTTTACCTAACCAAGAAAATCCCGCACAGGCATTTCCTGAGGCTTCCTTCCCAGGTGACTCTCGGTCCTGTCAAGTTGACAATTCACACAAACCACCATAGTCAGGTAGCTTAGAGGGTTGTGAGTGTCTGTGTTATGGCCAGTGAGTCGTGTCTGGTATGAGGGTGTATGTCCTACCATGGAAGGTGTTTAGGACATGGATGTGGTGCCCTCTACTCCCAAGAGGCTAGGGTCTGGGTCCTGAGGGTGTGGCTGATGGCTGTGAAGCTTTTCACAGTCTCATTGGCTTCCTATCCTTTCTCCCCACATTCTCCTCACTGAAG
Seq C2 exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATCGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGTTACCTTACCCCAAGGATGATGTGTGCGGGGGACCTTCGAGGAGGCAGGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397:ENSRNOT00000021949:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACATCCACCCTGCCTG
R:
GAGTCCCTGCCTCCTCGAAG
Band lengths:
235-2066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]