MmuINT0162664 @ mm9
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45151245-45153139:+
Coord C1 exon
chr9:45151245-45151343
Coord A exon
chr9:45151344-45152996
Coord C2 exon
chr9:45152997-45153139
Length
1653 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCACGTTCACCTCACTGAAGAGA
3' ss Score
1.82
Exon sequences
Seq C1 exon
CTCACATCCACCCTGCCTGCCTCCCCATGCATGGTCAGACCTTCGGCCTCAATGAGACCTGTTGGATCACGGGCTTTGGCAAAACCAAGGAGACAGATG
Seq A exon
GTGAGAGGCAGAGATGCAAGACTCTCTCTCTTTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGCGTATATAAGTGTGGTATGCAGATGAAGGCTAGTCTGGGTGAAAGTTTGGGTGTATAGACTCATAGTTAATATAGGAACATGAACACCTATGTTTATATCAGCACAGTCCACATGATAACATCTAGGAAAGACTGCCAGGAAACCCTACAGCTAATTAGGTGGGTCATTTCATTAAGAGGCTATAAAAGAAACTGGGGAGATGGCTGACTCAGTGGTTAAGAACACTTGCTACTCTTCCAGAGGACCTAGGCTTAGTTCTCAGCACCCACATAGTAACCCACATAGTAACTTAATCTCATCTAGAAGGAAGGTGGAACCCAAGGCTGTAACAGTAGAGGAGCAGTGGGCTCTGTACTGACTGGGCGAGAGCATGTTTGTTTGTGGTTTACATAAGGACTTCCTTGCATACTGGGTCCTGAGCCCAGAGCCTCTTGCTCATGTTCAGGTGTTTCTTCACATATTATTTTGGGGCAAGGTCTCAGTAGGTTACCCCGGCTGACGTTAAACTCATTTTGCAGCCTAGGCTTGCCTTGAACCGATCCCTCTGCCTTAGCCTCCAGGGCAGCTGAGATCACAGGCCTGCACCAGGAGGCCTGGATGGGACCCTTTTTTCACCTGTCCCAAAACAAGATGTCCTAAGGCCTCACTCAGTCTGAGTACCTTGTCTGGGGTCTGCTGTAGATGACTATCTGTGTCCCTCAGAGGGACACTGTGGCCTGGCTAGCCTGGTCATTACAGCAGTCACTATTCTTTGGCTTCCTATGGTGGAAAGCTGACTGGTCTGAACACAGCCTTCTGATCTTGCCTGTTTCACAGATTAGGGACCAGAGTGGGGCAAATAGTTTCTTCCGTCCTATGTTTCTATAAATACAAATGAGAGGTGAAGGCATGCCCTAAAATCTTTAGGGATCTGAAAACAAATGGCATAAAGAGATGGCACTTTGAATGTAGATGTGTGTGCAAAGTTGGCATGTGAGTTACTCTGCGTATTGCTGCCACAAAATACCTGACGGAATAGCTGAAGGAAGGAAGGGCTTACTGGCTCACAGGACACGGTGCCTCGTGGCAGGATGTCACAGCAGCAGTGGCATGGGCGGCTCCTCATACTGCACTGCAGTCAGGAAGCAGAGTGAGATAATTATTGCTACCTGGCTCCCTCTCCCTTTTTGTTCAGTCTAGGACCTAGCCCATGAAGTGGCACTGCCCATATTAAGGATGGAGCTTCCTACCTCAGTTTACCTAACCAGGAAAATCCCACACAGGCATTTCCTGAGGCTTCTTTCCCAGGTGATTGATTCTAGGTCCTGTCCAGTTGGCAATTCACACAAACCATAGGCTTGTGAGTTACCATGGGAGCAGGTCTCTGCTACGGTCAGGGAGTTGTGTCTGGTGTGAGGGTGCGTGTCCCACCATGTTTGGGTTTGGACACAAATGCGGTGCCCTCTACTCCCAGGAGGCTAGGGTCTGGGTCCTGGGGGTGCGGCTGATGGGTGTGAAGCCTTTCACAATCTCATTGGCTTCCTATCCTTTCTCCTCACGTTCACCTCACTGAAG
Seq C2 exon
AGAAGACATCTCCCTTCCTCCGAGAGGTTCAGGTCAACCTCATTGACTTCAAGAAGTGCAATGACTACTTGGTCTATGACAGCTACCTTACCCCAAGGATGATGTGTGCCGGGGATCTACGAGGAGGGAGGGACTCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129-Tmprss13:NM_001013373:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(14.4=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACATCCACCCTGCCTG
R:
AGTCCCTCCCTCCTCGTAGAT
Band lengths:
234-1887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: