BtaINT0118761 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53237097-53237862:+
Coord C1 exon
chr22:53237097-53237253
Coord A exon
chr22:53237254-53237599
Coord C2 exon
chr22:53237600-53237862
Length
346 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GACATGTCCTCTTCCCACAGCCG
3' ss Score
9.82
Exon sequences
Seq C1 exon
CGTGCGGCCAAGTGTTCCTGAAAATCTTGGGAGGACACGACAGCGAGGAAGGGAAGTGGCCCTGGCAGGTGAGCCTGAGGGTCCGTAACAGACATGTGTGCGGAGCTTCCCTCGTCACAGAGAGGTGGGTGCTGACTGCAGGCCACTGTATTTTAAG
Seq A exon
GTGAGTAATGACAGTGGAGATGCCAGAGTCCTGCCCTCCTCAGACACCCTTTAGTTTCTATTGCCCTGCAAGTTGATAGAAAACCCAAACCAAACCAAAGCCCGCACAATCAAAATGGGAGAGATTCTGCATTTTGGTAGTCTTGTTACCAGGAATGCTAATTTGATGATCAAATCCAGTTGTAGCAAATCCATTTTGAAAGTCATTAGGAGGGGATTTTGGGGATAGGGGCATGGAGAGAGTGGTGAGGGAGGTTGGGGCCAGATTGGGAAACAGCTGATGTGTGTGGAAAGGCACAAAGGATGCTTCCCAGGGTCTCTATGAGGGACATGTCCTCTTCCCACAG
Seq C2 exon
CCGTTACCAGTACAGTGTCACGATGGGAGATCGGAAACTCCAGGGTACATTATCAGGGTTGGTGGTCCCTGTCAGCCGCGTCGTCGTTCACCCTCAGTTCTCAACAAGTGGAACCGTTAAAAATGACCTTGCTCTTCTCCGGCTCCGCTACCCTGTAAATTTCACTGGCGTTATCCAGCCTATATGCATCCCTGAGAAGACTTTCCGCGTGCAAGCTGGGACCAGGTGCTGGGTGACCGGATGGGGAAGGAAGCAAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454:ENSBTAT00000010816:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGGTCCGTAACAGACA
R:
TTCTTGCTTCCTTCCCCATCC
Band lengths:
343-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]