MmuINT0127506 @ mm10
Intron Retention
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110798712-110799420:+
Coord C1 exon
chr9:110798712-110798868
Coord A exon
chr9:110798869-110799157
Coord C2 exon
chr9:110799158-110799420
Length
289 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCAACACATTTTTTCCATAGCCG
3' ss Score
5.55
Exon sequences
Seq C1 exon
TGTGTGGCCAACCCTTTATGAAGATCATGGGAGGGGTAGACGCTGAAGAGGGGAAGTGGCCTTGGCAGGTGAGCGTTCGGGTCAGGCACATGCATGTCTGTGGAGGTTCCCTCATCAATTCCCAGTGGGTGCTGACTGCCGCCCATTGTATTTACAG
Seq A exon
GTGAGGAGTCTTGGGGAGGGATCTGGAGGGAAACCCTGCTGTCTAATCTACCTGCCTGACAGAAACATTCCAGAACAAAAGAAGGGGGTGGCCGTGCTATGACCATCTTGTTACTAGAAATATTTAGGGTGTGGCACAGGCAAAACAGTTGAGAGATTAATAAAGAGTTTTAGTGACAGACACAGGATGATAGAGATTTGGGACATGTTGAGAAGCAGGGACGGAGTGGAAGGGGTATAAGAGAGCTTGGTGGGGTCATGGCTAACGAGGCAACACATTTTTTCCATAG
Seq C2 exon
CCGAATCCAGTACAACGTCAAGGTGGGCGATCGGAGTGTCTACCGACAGAATACAAGTCTGGTGATTCCCATCAAGACCATCTTTGTCCACCCTAAGTTCTCAACAACTATCGTCGTTAAAAATGATATTGCTCTTCTCAAGCTCCAACACCCTGTGAATTTCACCACTAACATATACCCTGTCTGCATCCCTTCAGAGAGTTTTCCTGTAAAAGCTGGGACCAAATGTTGGGTGACAGGATGGGGAAAACTAGTGCCAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664:ENSMUST00000035715:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATTCCCAGTGGGTGCTG
R:
GTTTTCCCCATCCTGTCACCC
Band lengths:
295-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types