RnoINT0118767 @ rn6
Intron Retention
Gene
ENSRNOG00000031971 | Prss42
Description
serine protease 42 [Source:RGD Symbol;Acc:1562548]
Coordinates
chr8:119065518-119066339:+
Coord C1 exon
chr8:119065518-119065674
Coord A exon
chr8:119065675-119066076
Coord C2 exon
chr8:119066077-119066339
Length
402 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TAACACATCTTTTCCCACAGCCG
3' ss Score
8.67
Exon sequences
Seq C1 exon
TGTGTGGCCAACCCTTGATGAAAATCATGGGAGGGGTGGATGCGGAAGAGGGAAAGTGGCCCTGGCAAGTGAGCCTTCGGGTCAGACACATGCACGTCTGCGGAGGATCCCTCCTCAACTCCCAATGGGTGCTGACTGCGGCTCATTGCATACACAG
Seq A exon
GTGAGGAGTGATGGGGAAAGTTCTGGAGGGAAACCCGGCCGTCTAATCTACCTGCCTGACAAAAACATTCCAAAACAAAAGAAGGGGGCAGTCATGCTATGACCATCTTGTTACTAGAAATACTTAGGATGTCGGCACGGGCAAAACAATTGAAAGATTTTTTTTTTTTGGTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAAGAGTTTTTTAATAAAGAGTTTTAGTGACAGAGACAGGAAGGTAGAGAGTAGCAAAAGAGGTTGGTTGGGGCCATGTCGAGAAACGGGGACCAGGTGGAAAGGGTATAGTCATGGCTCATGAGGTAACACATCTTTTCCCACAG
Seq C2 exon
CCGAGTCCAGTACAACGTCAAGATGGGCGATCGGAGTGTCTACCGGCAAAATACAAGTCTGGTGATTCCCATCCAGAACATCTTTGTCCACCCTAAGTTCTCAACAACTACCGTTGTCCAAAATGACATTGCCCTTCTCAAGCTCCAACAGCCCGTGAATTTCACCTCTAGCATCCATCCTATTTGTGTCCCTACGGGGACTTTTCATGTGAAAGCGGGAACCAAATGCTGGGTGACAGGATGGGGCAAACCAGATCCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031971:ENSRNOT00000051211:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=83.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGGAAGAGGGAAAGTGG
R:
GCATTTGGTTCCCGCTTTCAC
Band lengths:
348-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]