HsaINT1028230 @ hg38
Intron Retention
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46832947-46833676:-
Coord C1 exon
chr3:46833520-46833676
Coord A exon
chr3:46833207-46833519
Coord C2 exon
chr3:46832947-46833206
Length
313 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TAGAGGCATCTCTTCCACAGCCG
3' ss Score
4.29
Exon sequences
Seq C1 exon
TGTGTGGCCGAACCCCTCTGAGAATCGTGGGAGGAGTGGACGCGGAGGAAGGGAGGTGGCCCTGGCAGGTGAGCGTGAGGACCAAAGGCAGGCACATCTGCGGCGGCACCCTGGTCACCGCCACGTGGGTGCTGACGGCAGGCCACTGCATTTCCAG
Seq A exon
GTGAGGAGCGGCACGCGGGGCTGGGGGCCGGCCCCCTCAAGCACACACAGTTCCATTGCCCCGGCAATTTGGCGACAAAGAAACAAAACTCACAGTGAAGCCGGAGTGCATCGGTCGTCTTGCTGTAGGCATGTCTAAGTCGGGCAGACAAACCAAGTTTGAGAGTGATCAAGGAAGGGTTTTTGGTGATGGCGATGGGGTGGTAGGGACAGTGGCCCGGGAGGTTGAGGCCAGTTTCAGAAACATTGGAAATGTATGGAAAAGGCACAAAGGATGTTTCCCAGGCCTTCTCTTAGAGGCATCTCTTCCACAG
Seq C2 exon
CCGTTTCCATTACAGTGTCAAGATGGGAGATCGGAGTGTCTATAATGAAAACACAAGTGTGGTGGTCTCAGTCCAAAGAGCTTTTGTCCACCCTAAGTTCTCAACAGTTACAACCATTCGAAATGACCTTGCCCTTCTCCAGCTCCAACATCCTGTGAATTTTACCTCAAACATCCAGCCTATCTGCATCCCTCAGGAGAATTTCCAGGTGGAAGGTAGGACCAGGTGCTGGGTGACCGGATGGGGCAAAACACCAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055:ENST00000429665:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.6=83.0)
A:
NO
C2:
PF0008921=Trypsin=FE(40.7=100)
Main Inclusion Isoform:
ENST00000447340fB23543
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCTCTGAGAATCGTGGG
R:
TCCTGAGGGATGCAGATAGGC
Band lengths:
345-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains