BtaINT0118767 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031447 | PRSS45
Description
protease, serine, 45 [Source:HGNC Symbol;Acc:HGNC:30717]
Coordinates
chr22:53302205-53303497:+
Coord C1 exon
chr22:53302205-53302479
Coord A exon
chr22:53302480-53303333
Coord C2 exon
chr22:53303334-53303497
Length
854 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CACACTGGACTCCTCCACAGCCA
3' ss Score
5.1
Exon sequences
Seq C1 exon
CACAAAAGAGTATTCAGTGATTCTTGGCACCTCCAAGCTGAAACCCCCGAACTCCACAAGAACCCTCTTGATCCCTGTGAGGGACATCATTATGCACCCCAAGTACTGGGGCCGGACCTTCATCATGGGTGATGTGGCCCTTCTCCAACTTTACAATCCTGTCATCATCAGCAAGTATGTGCAGCCCATCTGCCTTCCAGAGCCCAATTACAGCCTGAAGGTTGGGACACAGTGCTGGGTAACTGGCTGGGGCCAGGTTAAACAGCGCTTCTCAG
Seq A exon
GTAAGGAGGAAGGGGTTGGGGGTGAGGTATGGCACCCCAGAGGGTACACTCCATTCTGTTCGGGTCTTGCCTGCTGAGCCCCTTCATGGTGCTTCTCACGAAGCTGTTACCTATGACCCCTGGTTCTTTGGATGTGTTAGGATTGCTCCTCACATGAGAACTGTTGCCATGGTTGACACCATTGCACTTGCTGTGGGCCCTTCATTTAGACCTAGCAAAGCCTGATCATTTGCTTCTTTCAGAAGCTTAGAGTTAGGGATTCATAAATTCATTCACTTATTCGTTTACCTGACAAATGTCAATGTTCAGGCATCTGCCACATGCCAGACCCTTGGCACTGAGGATGTATGTCCTGCCTCTTGGGAACTCATAACTGGAGTGTGGGTAGGGGCACAGACACAAGGAAAGAGGCAGAGACTTTATCAGGTGATCATGAGAGTAAGTGAGGACGAGTCTGGGATGAGCTCTGGGCAGAGGGTCTGCCTGAGGTGCCAGAAGGAGGAGTGAGTGTCAATCAGGTGGCAGAGGGCACAGCCAGTACAAAGCTCAGAGGCTGGAGAGAAGCAGCATGGTGTAGGGGTCTCAATTTCAGAGTAGTTGCACTGAAACTTGTATTGTATCCTGCTTGGTTCAAAAGCAAAAGATTCCCAGAGAAAAGGGTTTTGGAGTAGAGCCTTAGAGAGTTAGGTGCTTGTCAGACATGGCCCACACCGCAGGGGAAGGGACAAGTGAAGGAGGGCCTGTTGACGTGAAGGGCTGTGGCCAAGTCTTGATGCTGGAGGGACAAACCCTGGGGAGAGGCAGGGTTGAGTGGAGTGAGGAGTCAGTTCTCACCACACTGGACTCCTCCACAG
Seq C2 exon
CCAACTCCACGCTGGCCTCAGAGCTGCAGGAAGCCGAGGTGTTTATCATGGACAACAAGAAGTGTGACCAGATTTACCGCAAGAAATCCCACATCCCCCGCGTTGTCCCCCTTGTGCTGGGGGATATGATTTGTGCCACCAATTACAGAGAAGACTTGTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031447:ENSBTAT00000005550:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGAAACCCCCGAACTC
R:
CGGGGGATGTGGGATTTCTTG
Band lengths:
342-1196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]