BtaINT0118769 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038616 | PRSS46
Description
protease, serine, 46 [Source:HGNC Symbol;Acc:HGNC:37325]
Coordinates
chr22:53315513-53317858:+
Coord C1 exon
chr22:53315513-53315561
Coord A exon
chr22:53315562-53317680
Coord C2 exon
chr22:53317681-53317858
Length
2119 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTCTCTACCTTTTTCCTAAGGGT
3' ss Score
8.73
Exon sequences
Seq C1 exon
TGCCGTCCTGCTCTCTGCTGTCCTCAGGCGTCTGTGGCATCTGTGACTG
Seq A exon
GTGAGGATAGGCACTGCTCCTCGTTGCTGATGGCTGTGCCTGTGATGATGTGCGGGTGAGGACCTGTGACTTTGTAGGGATGGAGGTCATGAGCCAAGACAGGTGTCTCCATCACCACGTGTGAGGGCAGGTGGTGACATCAGAATACAGCTTGTGAGTGGGAGTGCTTGGACTCTGGAACTCCAAGGAGGGGTGGAGGTGATCTGCAGTGGTCTCTTGGAGCCACTAAGTGTCCCCTGTGTGTGGAATAGTATCACTGTGCCTATGAGAAGATTGATCTGCAACATCTCACGGCCCCAAATTAATCCATCCTGGTTCCCTAAAGGTTCAGCTGCTGTACTTGGTGCTGGCATCTGGTGCTGGCATCTCCAAGCTGAATCCTGCAAATCTTTCATAAGCTTTTGGGGGAAGAGATCAGAGTCAGTGTTGTCCTGGACATGAGTTCTGAGGAGTGCTATTCTCTGAAACTGAAGAACCCACTACACTTGTGGAGCACAGAAGCAAAGCCCAACCCTTCCTCCTAGCTGTCAGTTCCTTCCTTGCCACTCACTGGCCCCAACAGCGGGAGTGGGAGGAGAATGGGCTGCATTGAACTAGATATGAGACTTAGATTTTCAAGTGGTGAAGTTCATTCTGTGGGACCCTGGCTCTTCAGGGCCTTAGCCTTGTGAGAAAGGAAAGGGCAAGACGTTGGAAGCCATCTCTTTCCTCCCAAAGTCTCCATTGGGGTAGGCTGTAATCTGAAACAAGGTAGCCATAAACCAACCACAGTATATGAGAAAGGCTGGAAAATATAGCCACCCCACCTGGGACAGACAGAAAATAGGACAGCAAGCCACTGGCCAGAGACATGGGCAAGAATGGAGCAATGAGAGGGCAAGGTAGACAAAACTCCATGGAGATGCTGGGGCCTGTGTGGGTGCCTGTGGATCCCTGTAGGGAGCCACTGGTTGAGGGTAAAGGTGACCAGCCTCAGGTGTGGCAAAGAAACCAGCCACCCACATCTGCTAGCAGTACCAAGAGCCCTTGGACATGGTGGAACAAGACCAAACACCAGTGGTTTGGGACTCTGAGGGGCTGCTCTGAGGCATGGCCCAGTAGGTGTTTCTGCTAGTGTATGGGTCGCAAGAGATGATTAGCCTGGTCTGTCTGTTGTTGTACCCTCTCCACCACCACCATAATTCCCCTCCTGCCCCTTTCCCCCATTCCCAGGCAAGGACAAGCTTTGCTTGCTGCTGCTGAGTCCCTGAAGCTCTGGGTGGCACTGCACGCTGAACTGCTTAAGGAAACACTTGCTGGAACCACGTCTCCTTGAGACAGTGTAAACACATGTCCAAGTTTGCATGTAATGAGGATGTCTCTGACCTCCCTGTGACGGTTCTAGACCAGTCCAAACTTGACAGCAGGTTATACGTTGATAAAACATCTTTTTGTCTTTAATCTCAGTCTCCAACCTTTGCTGTAGAATTTCTCCTTTTCCTGTCCTCAATGATGCTGTTATTAAATACTAGTCCAGGAAGGTCCAGTTCAAAATCTCAGTCTCATAGCCAGTTCAATACAGCCCTGTCTCCTCCCACTCATGCTGTTGGGGCCAGTGAGGGGCAAGGAGGGAACTGACAGCATCTTTACTCATTTCCTGTTATAGTCACAGAGAGCACACCTCCAGGGCTGGTGGTCCATGGACCAGGCCCTGGAGTTGTACAATGTGACGTGACTGTCCGTTGCTTTCTGGCTACAACTGACTAGCAGCCCTGCTCATTGTGCCCCATCACTTAGTGCTTGACTGACTCTCATCCCTCTGATGATTCTCTTTTCCCCTTCACTCCCCTAACCTTTTGCTTGTGTTAACAAGGGAGAAGGGATGACTCCTGGGCTGTTGGATCCGAACAAGCCCTGGAGAGGTTGTCTGGTCCCGGTTGTTTGGAGGCTCTCTTTTTAGCATGGGGCTCCTGCTGCCTCTGGACCTTTGGTTGCCACTTTGGGGGTGGTGAGAAAAGTCCCTCCCCACATGTGCATGCGGCAGTGGCTGCTTGTGACGGCCAGAAGCCTGAGGGCTGCCCCTTGCTGCCTGAGAGTCTGCATGAGGCTGGCACGGCCCCCTCTCTACCTTTTTCCTAAG
Seq C2 exon
GGTCCTGGTTCCGGGCTTGTGGTCAGACTAACATCTCCTGCAAGAATGTGAACGGAAAGCTAGTGGAGGTAGGCAAGTGGCCATGGCAGGTGAGCATCCTATTCCTGGGCATGAGCATCTGCAGTGGCTCCCTCATCCACCGCCAGTGGGTCCTTACAGCTGCACACTGCTTACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038616:ENSBTAT00000053200:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]