MmuINT0127523 @ mm9
Intron Retention
Gene
ENSMUSG00000049719 | Prss46
Description
protease, serine, 46 [Source:MGI Symbol;Acc:MGI:1921556]
Coordinates
chr9:110747010-110752308:+
Coord C1 exon
chr9:110747010-110747138
Coord A exon
chr9:110747139-110752130
Coord C2 exon
chr9:110752131-110752308
Length
4992 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TCTCTCCACTCTCCCCTCAGGTC
3' ss Score
13.26
Exon sequences
Seq C1 exon
ACTCCATCTTGTTCTGAGGAGCAGTAAGGGCTGGACTCTGTGCCATGGCGTGTGGATCAGTGGATCCTCACGGTCTTCTCTCCTCTCCACTTGCTTCTGCCAGACTTAATAGTCTGCCCTATATGGAAG
Seq A exon
GTAGGACCGAGGAGGGATCTGAGAGCCTGGTGTCTACATTGGTTGTCCTCATACCTTCAGGGCCTCCAACTGTCAGTACTGGGACCGGTACATCCTCAGGAGGCTGGTGGGATGGGTGTGAGCTGTGACCTCTCATGACCCACGTGTCCCATACAGAGTGGCACCAGCATCGGTTTTCAGGGTGACCACAAACAGATGAGGGAAGAAAAACAGGGAACAAACTAACATCCATGGTATGGATGAGCTTGCCTGGGAGTCTTAGGTCTTGTGACAATGACTGGGCTGTCTGAGTGTCCCCTCACCCTATACCAATTCTCAGATGAGATGGTTGACCTCAGTGGTGGATGCTGGGGCCTCTGTTTCACCCAGGAAACCTGGGTCCAGCTTTAGTGCTTTGTGTGTGGTAGAACCGGGACTCCAAAAACAAAACAAAAACACGCAACAACAAAACCCCAAAACACAGAAACAGCTTAATAGAGGCTTTGGGATTGAAGTATTTGAGTGGCAGAGGACATCCAGCTTCCCTTCCTGAGAAAGGTAGTTTGTGTGGTAGGAGCCCTACCTTGAGTCACCTGCTGGCTATACATTTTGTGCTGGACAGGCGCTAGCTGGGGTGGTAACTGGGAATGGAGTGCATATTCCCCAGCTTGGATACCGTCCTCTTCCATCATGGTGTGACACCTCTCTCCTGGACTAGTGCACTGTTGAATGAGTGACTGAACCCTGAACTTCACTATACTGTCAGGCAGTAGTGATGTTTTCGGGCGGTTAGGTTATGTGCAGCTTTAGGCACCAGCATGGGAACTAAGTGCTGTGCCTTAGGTGAGGGTGGGAGTCAGCTATGACCTTACAGAAACAGAGTCCACAAAGCCAATAATCTTTGGGGTGTCCACCTATGAATGCAAAACAAACAAAGAAACAAACAAACAAACAAAGCACCAGGATCCTGTTTGTTTGTAAGTGGTGGGGCCCAGCTTCTAGAACGTCCAGACAGAGTATCAAGGTCTGAGGAGGAATCCATTTGAACCCCTGAGTGCCTGCTACAGACAGAAGAGTGACTTTGGAACAAGGTTGATCTGCAACACACTGCACACGAAGGGTACAAAGAACCCATCATGGCTGCGGGGATGGCTCCGTGGTTAAGAGAGTGTGCTGTTCTTCCAGAGGACCTAGGTTTGGTTCCCAGCAGCCACATCTGAGGCAGCTCACAACTGCCTGTAACTCTAGCTCCAAAGAATCCACCTGCATTCACATGCACACGCAAAGACATTGCCATAACACACATACACAGAGTTAAAAAATAATACAACTATTAAAATCAACCCATCATGCTCCCTCCTTGGAGCAGATAACTGCTGTTAGCATCTCCAGACTGAATGCCATGAGTCCTATGTAAGGTTTAGAGGAAGGTTGGGGTCAGTCCTGTCTTGGACACAAGATCTTGGAAGATCTGTTCTTTGAGGCCCAATGATCTTACAGAGGGTGAGGAACACTGAAGAAAGGGCCAACCTTAACCCCAGCGTTGTCACTGTGGGACTGGTGAAGTTTTTTTCCCCAGAACTTTGGCTCTCTCTGGGGTTGTTGTTTTATGGGGGGGAGGGGGAGGAAAGGGCAAACTTCTTAAACTGTCCCCTGACTATCAACACTGAACAGTCTTGGTTAAGATAGACTGAAATCAGAAACAGAAAGGTCTTAGTCACTGTCCTATTGCTGTGATGAAACACCATGCCCAAGACAAGTTATCAGAGGAAGCGTTTGATTGAGGGCTTGCTTACAGTTTCAGAGGGTTAGACTATGATCATCATGGAGGGACACACGGCCACAGGAAGGCCGCCATAGTGCTGGAGCAGTACCTGAGACTCACATTTGATCCTTGAGTTGCAGGCAGAGACTGGGCCTGGTGTGGGCTTTTGAAACCTCAAAGCTCACCCCCAGTGACACACTTCCTCCAACAAGGCCACACCTCCTAATCCTTCTCAAACAGTTACTATGGAAAAGCATTCAAATATATGAGCCTATTGGGGGGGGGAGCATACTCATTAAAAACCACCAGTGTCCATAAAGAAGAAACAATAGCAGCAACAATGGATGGCCGTGAGCTTACCATTGTGTATGAGAAAGTCCAGGAATGTGGCTCTCTGTGGTAGGGGTGGGGATAAAGGAGAGAGGAGACAGGCATGGAGATGGGATGCAGGCATGAGCTGAGCATCCAGAGAAGAAGGCAGTACTGTGTGGAGACTTAGGGGTCTGCACGGTGCCTGTAACCCCTGTGGAAGGCCAGTAGTTGAAAGAACATTCTGCCCACAGGGGTCTATGACAAGGGAACAGTTACCTCTGATAGCAGGAGCTGGGGAGTTTAAAGATTTGTCACACGAGGTGGAGGTTGGGGATGGGAGAAGAACCTCCTAATGAAGGTAGAACTGCCTGTCCTTTATATAAAGTCAGGAAGCAGAGAGAGGCTTGGTGAGTCCTAGACTCCTTTGAGGACATGTCTCTACTGATGTTAAAGCCCCTCACCAGATCCCACCTCCGTGTGAGCATGTGCACCTATGTAGGCACATGTGTAGGCTGGGGGTTGACATCAAGATGTTCCTCTAAATCACTTTTCCACCATATTTTTTGAGACAAGGTCTTTCCCTGAACCTGGAATTCACCATTTCAGTCATACTGGCTGCCAGGAGAGCGCCTAGGATCTACTTGTGTTGGCCCACAAGCACTGGGGTTACAGGTGTGTCCACTGCCACATCTGCCTGGGAATCACGATTGCACAAGACCTTACCATCTCTCCAACCATAAACCATACCTCTTAAAGGTCTAAACCCTCTATATCACTTCCTGAGGACCAACTCTATATATGGACCTTCAAAGGAACACACAAATTACATCCACGCCATAGTGGTTTCAACAAGCTAGGACCTGTCTGATGTTAACTGCTAATAGGTAGTTTATCCTGGGTATTAGAGTTATCCATCGTCCCTTAACCATCCCAGCCCCCACCCCCACCCCAGACTGTAGCCGTTGAGCCCCAACACTGTTCTACGTTGCATGGTGTACAGCTGAGGGAAGCAGACTCTGTGCTCTGTGTCATGGCAGCGTCTGCTAGTGTGACATAGTTCAGTTCCACCTGTTTGAGGAGCTCAGTGACTACATGTGATGAAATGTCCCATTTAAAACAAACAAGACAGCCGGGCAGTGGTGGCCCACGCCTTTAATCCCACCACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGTACATCCAGGGCTACACAGAGAAACCCTGTCTAAAAACAAACAAACAAACAAACAAACAAAGACAACAACAAAAGCTCCCCTCCCCCATCAAAGATAGATCAAACCTCACTCCCACTGTGTATGGCGCCACACATCTGTAATCCTAGAACGTGGGAGATAAAGGAAAATCAGGATTACACCATACTTTGACTGGCTAGCCTGAGCTACATAGACCCTGAATTTAAGAAGAAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGGAGAAGGAAGGAGAAGGAGAAGGAAGAAGAAAGAAGGAGAAGGAAAAGGAAAGAAGGAGAAAAGAAGAAGGAGGAGGAGGAAAGAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAAGAAGGGGCTGGAAAGATGGCTAATCAGTTAAGAATACTGTTTTTCCAGAAGAACCAGGTTTGATTGACAGCACCCAGGTCAAGCAGCTCACAACCATTTGTAACCCCAGTTCCAGGGAATCTGATATCCTCTCTGTGTATGGCACACACATGATGTGCAGAAGTATATACAAGCAAAACACCATGCACATAAAAATAGAATCAAATAATAAAAAGGCAAAACTAACTAGTTTAGTACAAAGACTAAAATCTCAACCTTATCTCCAGTTCAATGCAAGCTCCTATCCTCCTGTCCCTGTTCTTGAGGCCAGGGAGAGACAGGCAAGCCTCTTTATTTCCTGGGTATGTATGAGCTAGGGCTATAGTTGTGCAATAAAACATCATGCAAAAAAAAAAAAATAAAGAAAAAAAGAAGGAAGAGAGAGAGGGAGAGAAAGAGAGAGAAAGCAAGAAAGAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAGAGAAAGAAAGGAGGGAAGGAGGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAGAAAGCCAGCCAGCCGGGCAGTGGTTGCATACACCTTTACCAAAGGCAGGTAGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTTCCAGGACAGCCAGGGTTACACAGAAAAGCCCAGTCTCAAACAAACAAACAAACAAACAAACAAAACAAAACAAAACAAAACAAAACAAAAAACAAACCTGTCCATGTATTTTTAGATGCAACCAACAGGAGTCCTGGGCACGAGGCCCGACACTCGCTCAGAGTTGATGATCTCACCCTCTGGTGATTCTCCCCCCCCCCCCCAGTCATCCATACCACGGGCAAGAATGAGTCCTGGGGTGATTGCTCATAACCATAACAAGTGTCAGACAGTTGTCTGGACTACTGTTTAAGGGAGTTTCTTTATAACTGGGGCCTCCGGCTGCTTCTGAGTCAGTGGTTCCCAGTTTTGAGGTGGTAGCTTCAGTCCCTCCCCCGACATACGCCAGTGGCAGTGACTGCTTGGGACACAGCTAAATGATGTGTTGGTGGTCTGCCATGGCCCATGGGATGAGGGCTACCCTTTGCATCCCTCTCTCCACTCTCCCCTCAG
Seq C2 exon
GTCCCTGGATCTGGTCCTGTGGTCAGACCAACATAACCTGCAAGGTGGTAAATGGGAAGGCGGTGGAAGTAGGCAAGTGGCCGTGGCAGGTAAGCATTCTTTTCCTGGGAATGTACATCTGCAGCGGCTCCCTCATCCACCACCACTGGATCCTCACCGCTGCACACTGCTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049719-Prss46:NM_183103:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(10.4=95.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: