BtaINT0118786 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005019 | PRSS50
Description
protease, serine, 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr22:53342982-53343856:+
Coord C1 exon
chr22:53342982-53343148
Coord A exon
chr22:53343149-53343625
Coord C2 exon
chr22:53343626-53343856
Length
477 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGC
5' ss Score
4.3
3' ss Seq
TTCTCCACCCCTCCCCACAGGAG
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTCAGTGGCCCCAATTTCGAACCATCCAGGAGAAGGAAGTCACCATCCTGAACAGCACAGAGTGTGACAGCCTCTACCGCAGGTTCTCCAAAATCCCCTCTCTGATTCAGATCATCAACTCCCAGATGATTTGTGCAAAGGACGTCGACAGGGAAAAATTCTGCTAC
Seq A exon
GTGAGCATCTCTCGCCCTTGCTCATTTGCCTCCAAGGGCACCTGGCCAGAATTGGGGTGAGGGGCACAGCAGAGGCAGGACATGTGGGGAGGAGAGAGGGGCCAGGGATGAGCAGGGGTAAGTGAGGAGGAAGATGAAGGAGGGGGAAATTTGACAGGGAATGGAGATTGGGGGGAATGAGATGAGAGTTGGGGAGAGAGAGATGGGGAGTGGGGATGGAGGTTGGAGATGCAGGAGGACGGGAAGGGTGGGAAGATGGAAGGTGGATGTTAAAGAGATGGGGGATGGAGAGAGATGGAAGGTGGAGCCTTTTAAGGAAGGTCTCCTGGGTCAGGACTTCAAAGGTACCTCTCAGCTATAAGACACTTGGAGGCTGCGCAGAAGGTTTGGTGAGGGCACCCTGCTTGTTCCCGAGCTGGATCAAGTCTCCTTTGGACCACATGTGGCCTCCCTTTTGTTCTCCACCCCTCCCCACAG
Seq C2 exon
GAGATAAGTGGGGAGCCCTTGGCCTGTCCTGTGCAGAACATATGGCACCTGGTGGGAGTGGTGAGCTGGGGCCCAGGCTGCAAGAAGAGCGAGGCTCCGCCTATCTACATCCACATCTCCTCCTACCAACAGTGGATCTGGGACCGCATCAGCGGGCAGACTCTGCCAGCCCCATCCCGGGCCCTGCTCCTGGCACTCCTGATGCTCCTCAGCTTCCTTGCTGCCCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005019:ENSBTAT00000055134:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.9=58.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAACCATCCAGGAGAAGGA
R:
GAGCATCAGGAGTGCCAGGAG
Band lengths:
358-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]