RnoINT0118796 @ rn6
Intron Retention
Gene
ENSRNOG00000037175 | Prss50
Description
serine protease 50 [Source:RGD Symbol;Acc:6499372]
Coordinates
chr8:119140406-119141150:+
Coord C1 exon
chr8:119140406-119140572
Coord A exon
chr8:119140573-119140913
Coord C2 exon
chr8:119140914-119141150
Length
341 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGG
5' ss Score
2.41
3' ss Seq
AACTTCTTCCCTCCTTACAGGAG
3' ss Score
10.42
Exon sequences
Seq C1 exon
GCCTATGGCCCCAGTTCCAAACCCTCCAGGAGAAGGAAGTCTCTATCCTGAACAGCAGGGAGTGTGAGCATTACTACCACAAGTTCTCCAGGATCCACTCTCTGGTTCGGATCATCAGCCCTCAGATGATCTGTGCCTTGGACAACGACAGGGAAAAGTTCTGCTAT
Seq A exon
GTGAGGACCACTGTCCCTTGCTCACTTATCCCAAGGGGTGGAGGGGTGCAGGAGGCAGAGCCGAGAGCGACAGAGAGGGGAGAGAGGGAGAGAGGGTGAGAAAGTAAGCAGGGGTAGGGGTGGGAGAGGATGGAGGTGAGGACGGGGATGAGACTGGGAGGGAATTGGGTGTGGATTGAGGACGGAGTGTCCTATGGGGAGGAAGTATCAGTTCGTTCATTCTGGGGGGGTATGGAGATAACCTGGTGGGAACATCCTGGGTGGGGTCCCTGAGTCGGGTCACGGCCCCCTCAGACGTGGCTTCACCTCCCTGACCTTTTTAACTTCTTCCCTCCTTACAG
Seq C2 exon
GAGAGGTCTGGTGAGCCCCTGGTCTGCTCTTCAGACGGCATGTGGTACCTGGTAGGAGTGATGAGCTGGGGCCCGGGCTGCAAGAAGAGTGAGGCCCCGCCCATCTTTCTCCAGGTCTCTCACTACCAGCTGTGGATCTGGGACCGCCTTAGTGGGGAGCCCCTGGCCCTTCCGGCGCCATCCAGGACCTTGCTTCTGGGTTTCCTTCTGCTCCTCATCCTTCTGGGCACTCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037175:ENSRNOT00000056114:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=57.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACCCTCCAGGAGAAGGA
R:
GGAAACCCAGAAGCAAGGTCC
Band lengths:
356-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]